Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0352 ATGTTCATCCAGCAACAAGACCAAGACCATGGCAACAACAACAACAACAACAATGGTTATGCCCATGATGCCAAGACTCTCATCTCTGCTGTCAATTTTCTTTCTCGCAATCTCCCTCTTCCACCTCATCTACTTAACTCTGTTAACGATATCTATCATAACCCACAACTCAATGACAAAGAAGGGGATTCTAAAGAAGATTTAATGACAGATCTTCAAGATGCACTATCGAAGCAACGCCCAAATTGTGCGTCAGGTATCAAATTGGCGAAAGCAAGGGAAAACCGTTATCAAAGTCAGATTCAACGTCGACTAAAACAACTTGAAGAATTGCCTTCAAGCAGGGGAGAAGATCTGCAGACAAAATGCCTGCTTGAACTTTATGGACTAAAGCTAGCAGAGTTGCAGTCTAAAATTCGGTCTGAGGTGAGTTCTGAATACTGGCTCAATGTGAAATGTGCATATCCCGACAAACAGTTATTTGATTGGGGCATGATGCGGTTGCAACGTCCACTGTATGGTGTTGGAGATCCATTTGCTATGGATGCAGATGATCAACTGAGGAAGAAACGGGATGCTGAGAGATTATCAAGATTAGAAGAGGAGGAAAAAAATCAAATAGAGACTAGAAAAAGAAGATTTTTTGCAGAAATACTTAATACCGTCCGTGAGTTCCAATTACAAATCCAAGCTTCTTTGAAGCGTAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGACAAAGACAAAGGGCATCGCGAGCAGAAAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTCCAAACGTTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACCTGAGCCAGACGCTTCAAAGAATGGAATTTCTAAGGAATCTCCTGTAGATGAAGATGTGGTAGATTCTGATCATAATGATGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATATAATTCTGCCATACATTCAATTCAAGAGAAGGTAACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACAATACCAGATAGAAGGACTCCAGTGGATGCTTTCTTTGTTTAACAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACCATACAAACTATTTCGCTGATAGCATATCTTATTGAATACAAGGGTGTGGCAGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCCATGAATTCGCAACATGGGTTCCGACAATTAAAGCCATTCTTTATGATGGACGGCTTGAAGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAGTTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAGAATTCATTGGCACTACTTGATTGTGGATGAAGGACATCGATTGAAGAATCACGAGTCTGCTCTAGCAAGAACCCTGGACTCTGGAGGCTATCACATCCAGCGCAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAACTGTGGTCCCTGCTTAATTTTCTCCTTCCGAACATTTTCAACTCAGTTCAGAATTTTGAGGACTGGTTTAATGCCCCCTTTTCAGACCGAGTTGATGTCTCTCTTTCAGATGAAGAACAACTATTGATCATTCGGCGTCTACATCAGGTGATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATATCTTCCTCAGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACGGATGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTTAGAAAATGCTGTAACCATCCCTACCTCTTCGTTGGAGATTACGATATGTATAGGCGTAAAGAAGAGATTGTCAGGGCATCAGGCAAGTTTGAACTTCTTGACCGTCTGCTCCCGAAACTTCGCAGAGCAGGCCACAGGGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACGTTCTCGAAATTTATTTGCGACTTCATGATTTTAAGTATCTTAGACTCGATGGTTCAACAAAAACTGAGGAAAGAGGCACTCTGTTAAAGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGACACTGTTATAATATTTGACAGCGATTGGAATCCCCAAATGGATCAACAAGCCGAGGATCGAGCACATCGTATTGGACAAAAAAAGGAAGTTAGGGTATTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACCTCGACAGCCCAGGACAGAAGAGAAATGTTAGAGGAGATTTTGCGTAGAGGTTCAAGCTCACTTGGGAATGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGAAGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGGCAAAAGGAGAATTACAGAACTCGGCTCTTGGAAGAGCATGAGTTGCCAGATTGGGTGTACTCTCCACTCAATAAGGATGATAAGGCCAAAGCTTTCAACAGTACTAGTGTTACTGGAAAGCGGAAAAGAAAAGACGTGGTATATGCAGATACATTAAGTGATCTACAATGGGCAAAGGCTGTGGAAAGTGGGGTAGACATATCAACTCTTTCGAGTAAAGGGAAAAGAAGAGATCAATACCGATCTGACACCGTTGCACAAGCCAGTGATAATTCGGGGGCAGAAGAAAGGTTTTCAGAGTTAAGGACTGAAAATGACCCTGTGGCAGATGAGAGAACAAGTGACGATAGTTTTCATGCGACGCATGCTTCAAAGAGACTCAAGCCTGAAGGAAGAAGTTCTCATGCGTACGATGATGTCAGAGGAAGTGGTTTGAATCAGCCCATATTATCCTGGAATACTCATAAAAAGAAGAGGTCGAGCTATCTTGGCCAAGGTTCATCATCTGATAGTAGAGGGCAGAACTCAAATGGAAAAGCAAACTGGAACTGA 3276 0.4167 MFIQQQDQDHGNNNNNNNGYAHDAKTLISAVNFLSRNLPLPPHLLNSVNDIYHNPQLNDKEGDSKEDLMTDLQDALSKQRPNCASGIKLAKARENRYQSQIQRRLKQLEELPSSRGEDLQTKCLLELYGLKLAELQSKIRSEVSSEYWLNVKCAYPDKQLFDWGMMRLQRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEEEKNQIETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRASRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKRSDGIEPLEDSEADLPEPDASKNGISKESPVDEDVVDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRQYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEYKGVAGPHLIVAPKAVLPNWVHEFATWVPTIKAILYDGRLEERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKRIHWHYLIVDEGHRLKNHESALARTLDSGGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFSDRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPQKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEILRRGSSSLGNDVPSEREINRLAARSEEEFWLFEKMDEERRQKENYRTRLLEEHELPDWVYSPLNKDDKAKAFNSTSVTGKRKRKDVVYADTLSDLQWAKAVESGVDISTLSSKGKRRDQYRSDTVAQASDNSGAEERFSELRTENDPVADERTSDDSFHATHASKRLKPEGRSSHAYDDVRGSGLNQPILSWNTHKKKRSSYLGQGSSSDSRGQNSNGKANWN* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0352 1091 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 869 IPR001650 -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 306 357 - -
Lan20g0352 1091 PANTHER SNF2/RAD54 HELICASE FAMILY 21 1025 - -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 1003 1045 - -
Lan20g0352 1091 SMART helicmild6 728 812 IPR001650 -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 1 20 - -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 238 257 - -
Lan20g0352 1091 SMART SnAC_2 905 966 IPR029295 GO:0042393
Lan20g0352 1091 Pfam Helicase conserved C-terminal domain 699 812 IPR001650 -
Lan20g0352 1091 Pfam Snf2-ATP coupling, chromatin remodelling complex 905 965 IPR029295 GO:0042393
Lan20g0352 1091 Pfam SNF2-related domain 390 679 IPR000330 GO:0005524|GO:0140658
Lan20g0352 1091 CDD SF2_C_SNF 690 823 - -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 979 1091 - -
Lan20g0352 1091 Gene3D - 619 917 IPR027417 -
Lan20g0352 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 875 IPR027417 -
Lan20g0352 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 613 IPR027417 -
Lan20g0352 1091 Gene3D - 355 612 IPR038718 -
Lan20g0352 1091 PANTHER ATP-DEPENDENT HELICASE BRM 21 1025 - -
Lan20g0352 1091 SMART ultradead3 383 577 IPR014001 -
Lan20g0352 1091 Coils Coil 190 213 - -
Lan20g0352 1091 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 566 IPR014001 -
Lan20g0352 1091 MobiDBLite consensus disorder prediction 1054 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0352 Lan-Chr20 2447188 2457892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0352 695 840 RAD5 or RAD16-like Gene Family AT5G43530 38.000 2.08e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan20g0352 SNF2_N 1.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0352 - - lang:109355051 1964.12