Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0350 ATGAGCAATGAAATCATCGCGCAGAAGCTTCCCCCTTCGATTCTCGTGGGTCGCTTCAAGGCACTGCTCAAGCACCGTGACGATGAACTCAGGGATTCTCTCGGCGCTCCTGTGCCGCCACCCACCACCGACGAAATAGTGCAGATTTACGAGCTGCTATTGTCAGAGCTCACGTGCAATTTGAAGCCAATTATCACCTATCTCACTATCATTGCGGAGCAGCAGAGGGAACATGCTAAGGGTATTGCTGATGCAATTTGCGCTCACATTCTCGAGGTTCCTGCAGATCAAAAGCTACCTGCACTCTATCTTTTGGACAGTATTGTGAAGAATTATGGTCAAGAATATGTTAGATATTTCTCTTTACGTCTGCCAGAAGTTTTCTGTGTGGCATACAGGCAAGTCCAGCCTAGTTTGCATCCTGCTATGCGCCATTTGTTTGGAACCTGGTCAAAAGTTTTTCCACCTTCTGTCCTACAAAAGATTGAAGCTCAATTGCAATTTTCTCAAGATGTTAATAATCAATCATCCACCATGAATTTCCTCAGGGCATCTGAATCTCCTCGACCTAGTCATGGTATTCATGTTAATCCAAAATACTTGCGGCAGTTAGATCGCTCAACTGTGGATAGTGTTGCTGGTGAAAAGTTGGACTCATCAGGAAAGGCTAGTAATATAAGTTTTGGCCTTGTAGCTAGTAAGACACACCAATTTGTATCTAGTAGGGTTGGAATGCCCTCTTCACCTTCACGAACTGGAGTTGATAGGCCTTTTTCTTCATCTATAGATGAATATGCAGTTGACAATTTTGCTACTAGGATAACTGAGAGAGAGTCTCCTCGTCCCGCTGTTGATTATGCAATGGCCAAAGCATCAGGTAGAGATGAAGAGTTGAGTGATTGGCAGAGAAAACAGTATTCTGGTGATGGTCAAAATCGGTTTCAAACTTCTATGGCATACAGCCTTAGTAGTGGACATCAGCGTCAAAGTCCAAGATCACTGATTGATGCATATGGCTGTGACAAAAGCCAAGAAACTTCAAGAAATAAGCCTTTGTTAGTTGAACGGCTGGACAGAAATGGTAAAGACAACATGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAGGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGTTGTCTTGCCATCAACAATTGGTTTCCCCAGGGAAAGGCCTGGTATTCTTGCAGCTAATGCAACTTCGCTAGAGCAAGATATCAGGAAGGGTTGGTCCAGCGGGTCCCAGATTCCTCCAGTGGATGATTCTTCTGTTACAGCAGAAGATGCATTTCCCTCTTCAGCTTATGGTCAGGTATCTCGATTTCAGAATCAAATAGATCAGAGTCTAGGATCCCGTCAACCTCATGAAGCTTGGAAGATTTCTCATCATCCATCTAATTCTTCACAACACTTACTTAATATTAGGGGAGGACCAAGGAGTCATGTAATGCCCCCGACTGATAACATTATCAATACAAATGCAAACCCATTTGGGATTCGACCTGCCGCATCAAGGATTTCTGGTATTGTCTCTAATATGGAGACTTATTATCCACCAGTTTTGCCTGCATCTTTTGAAATAAGGCCTTCAGTAAATGCGCATGCCACTCGTCCTCCCACTTTAAATCCAATATCTCCATTGCAAAGACATGCCAGGAGTCATTTTGAAGCTATAAACACTAGTAATCCCATAATGAATCATGGTCCAAATAAATCTTCATATATGCCTGAACAGTTGTTGGAAAGTGTTGAGAACAAGGATACAGGTAAAGCAAGGATAAATCAGTTGCCTAATCATCTTGCTGGACTACCACAGCTGCAGAATTTTCCATCTCAGGATCCATCTGCCCCACAATATAATCATGCAGTCTCTTTGCAAGGACATGGTGCTTCTCTAACTACAGCCATGTCAAATCCGCTACCTGTTATACAATTCCCTCGATCTACCCAAGGTATTGCAAATAGCTCTTTTAATTTTCAAGGGGGAGCCCATCCACCTCTACCCCCAGGCCGCCCTCGTGCACCATTACAAATGATTCCTCGTCCAAATGTTAGTCCATTCATGCCAAGTCAACAGCCAACTGTTGCATATACCACTTTAATTAATTCACTAATGTCCCAAGGCATGATCTCATTGGCTAACCAGCCCCCTATACAGGATTCTGTTGGAACTGAGTTTAATCTAGATATTCTGAAGTTTCGTCATGAATCTGCAATCAATGCTCTATATGGTGATCTCCCAAGACAATGCACCACCTGTGGGCTCCGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACCAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCATCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCAAACTGAGAAAGTAGAGGAAAAGAAAGATGATGAAGAGTTGGCAGTTCCAGCTGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTCGAAGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTGAATGCACCCACGGGGACAACAGCAGGCATGGACAGGTCACAGTTAGGTCCCATTATTCATGCTAAATGCAGATCAGAATCTAGCGTGCCCCCCTCTGAAGATTTTGGACATGATGCAGGGGGTGCCAATGAAGAGGGCAGTCAAAGAAAACGAATGCGGAGTTGA 2799 0.4373 MSNEIIAQKLPPSILVGRFKALLKHRDDELRDSLGAPVPPPTTDEIVQIYELLLSELTCNLKPIITYLTIIAEQQREHAKGIADAICAHILEVPADQKLPALYLLDSIVKNYGQEYVRYFSLRLPEVFCVAYRQVQPSLHPAMRHLFGTWSKVFPPSVLQKIEAQLQFSQDVNNQSSTMNFLRASESPRPSHGIHVNPKYLRQLDRSTVDSVAGEKLDSSGKASNISFGLVASKTHQFVSSRVGMPSSPSRTGVDRPFSSSIDEYAVDNFATRITERESPRPAVDYAMAKASGRDEELSDWQRKQYSGDGQNRFQTSMAYSLSSGHQRQSPRSLIDAYGCDKSQETSRNKPLLVERLDRNGKDNMLSTSWQNTEEEEFDWEDMSPTLVDHSRNNVVLPSTIGFPRERPGILAANATSLEQDIRKGWSSGSQIPPVDDSSVTAEDAFPSSAYGQVSRFQNQIDQSLGSRQPHEAWKISHHPSNSSQHLLNIRGGPRSHVMPPTDNIINTNANPFGIRPAASRISGIVSNMETYYPPVLPASFEIRPSVNAHATRPPTLNPISPLQRHARSHFEAINTSNPIMNHGPNKSSYMPEQLLESVENKDTGKARINQLPNHLAGLPQLQNFPSQDPSAPQYNHAVSLQGHGASLTTAMSNPLPVIQFPRSTQGIANSSFNFQGGAHPPLPPGRPRAPLQMIPRPNVSPFMPSQQPTVAYTTLINSLMSQGMISLANQPPIQDSVGTEFNLDILKFRHESAINALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLQTEKVEEKKDDEELAVPAEEDQNTCALCGEPFEEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRSQLGPIIHAKCRSESSVPPSEDFGHDAGGANEEGSQRKRMRS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0350 932 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 906 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lan20g0350 932 CDD CID_Pcf11 50 167 - -
Lan20g0350 932 ProSitePatterns Zinc finger C2H2 type domain signature. 766 786 IPR013087 -
Lan20g0350 932 SUPERFAMILY ENTH/VHS domain 42 170 IPR008942 -
Lan20g0350 932 SMART 558neu5 45 167 IPR006569 -
Lan20g0350 932 ProSiteProfiles CID domain profile. 42 170 IPR006569 -
Lan20g0350 932 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 906 - -
Lan20g0350 932 Gene3D - 40 168 IPR008942 -
Lan20g0350 932 Pfam CID domain 62 162 IPR006569 -
Lan20g0350 932 MobiDBLite consensus disorder prediction 916 932 - -
Lan20g0350 932 MobiDBLite consensus disorder prediction 901 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0350 Lan-Chr20 2433940 2439578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0350 1 932 C2H2 Transcription Factor Family AT4G04885 44.894 0.0 658