Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0348 ATGGATCATGACCAAGGTCACATTGTTTCCATCTCTGATGACAAATATGCTCAAAAGTTGGATGATGATGATCTTGTTTTCGTCTCTGATAAGGAATATGCTCAAGAGTTGCAGTTGCAAGAGGCCCTCATAGCCTCTGTCCCTCCGCGAAACACTACCATCAAGGGCTCGTTATCGTCATCATCATTACCATCTTCATCCAATGTTGTTCAAGTCAGCCTAGACTGCAAGAAGATAAAGTTCGCGGATGAAGAAGCAGGAGAGTCCTCACGAATCATCTGCGAGATATGCGCAGAAACCAAAGAGAGCGAACAAATGTTCAGGAACAAGTTATGTGACCATTCATTCTGCTCTGACTGTGTGATCAAACAAGTGGCCACAAAGGTTCAAGACAACATAACAGTAGTTTCATGCCCTGGTTTGGACTGCAAGGGTGTGTTGGACCTTGATGTTTGTAGGCCATTGCTTCCAAAAGTACTTGTTGAAAGGTGGGATAAGGCACTGTGTGAGGCACTTTTTGTTGCAGTACCCAAATTTTATTGCCCATTTAAGGATTGTTCTGCTATGCTGTTGGTTGATCAAGAAGGAGAAAACATTAGGGAGTCTGAGTGTCCCTTTTGTCACAGACTCTTCTGTGCACAGTGTAATGCTCCTTGGCATTCTGAGGTTGATTGTGATGTGTTTCAGAATCTGAATAAGGATGAGAAAGGAAGAGAAGACCTACTTGTTAGAGAACTTGCCATTGAAAACAAGTGGAGTAGGTGTCCCATGTGCAAGTTCTATGTGGAAAAGATTGCAGGATGTTTGCATATCACATGCAGGTGCAAATTTCAGTTTTGCTATGCTTGTGGAGAACAATGGACAACTACTCATGGGGGCTGCCAAATAGATTAG 894 0.4306 MDHDQGHIVSISDDKYAQKLDDDDLVFVSDKEYAQELQLQEALIASVPPRNTTIKGSLSSSSLPSSSNVVQVSLDCKKIKFADEEAGESSRIICEICAETKESEQMFRNKLCDHSFCSDCVIKQVATKVQDNITVVSCPGLDCKGVLDLDVCRPLLPKVLVERWDKALCEALFVAVPKFYCPFKDCSAMLLVDQEGENIRESECPFCHRLFCAQCNAPWHSEVDCDVFQNLNKDEKGREDLLVRELAIENKWSRCPMCKFYVEKIAGCLHITCRCKFQFCYACGEQWTTTHGGCQID* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0348 297 SUPERFAMILY RING/U-box 89 171 - -
Lan20g0348 297 SMART ibrneu5 162 225 IPR002867 -
Lan20g0348 297 SMART ibrneu5 235 294 IPR002867 -
Lan20g0348 297 Gene3D - 227 296 - -
Lan20g0348 297 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 286 IPR031127 GO:0004842|GO:0016567
Lan20g0348 297 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 286 - -
Lan20g0348 297 ProSiteProfiles TRIAD supradomain profile. 90 297 IPR044066 -
Lan20g0348 297 Pfam IBR domain, a half RING-finger domain 246 294 IPR002867 -
Lan20g0348 297 Pfam IBR domain, a half RING-finger domain 179 225 IPR002867 -
Lan20g0348 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
Lan20g0348 297 Gene3D - 179 226 - -
Lan20g0348 297 ProSiteProfiles Zinc finger RING-type profile. 94 139 IPR001841 -
Lan20g0348 297 ProSitePatterns Zinc finger RING-type signature. 112 121 IPR017907 -
Lan20g0348 297 SUPERFAMILY RING/U-box 236 295 - -
Lan20g0348 297 SUPERFAMILY RING/U-box 167 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0348 Lan-Chr20 2411414 2413035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0348 87 284 C3H Transcription Factor Family AT2G19610 26.923 5.01e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0348 K11975 - qsu:112001859 346.28