Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0343 ATGGCGTCTTCATTTTCGATCGCAACACCAACAACTCTGACAAATGTTCCAGAACTCACAATCAGAAACAGAGCTTGTTTCAACCGTAACTCTACGGTTTCAATGGGAGGATTTCAAAACCTACGCCGTCTCAATCTGAATCTGAATACGAATGGTCGTTCACCAACACTAAGAAACAATAAGGGTTTCTCTTCACTGGTAGTTAGGGCAAGTACTGAAGAAGCAGTAGTTCCACAATCGAAAGTGACTCACAAAGTATACTTCGATATCAGTATCGGAAATCCAGTTGGTAAGCTCGCTGGAAGAATTGTGATTGGATTGTACGGTGATGATGTGCCACAAACCGTTGAGAATTTCCGTGCTCTTGCCACCGGAGAAAAGGGTTTTGGTTACAAGGGTTCCGCGTTTCACCGTGTTATCAAGGATTTCATGATTCAAGGAGGCGATTTTGACAAGGGCAATGGTACTGGAGGGAAAAGTATATATGGTCGTACTTTCAAGGATGAGAACTTTAAATTGACTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGCCCCAACACAAATGGGAGTCAGTTTTTCATATGCACGGTGAAGACACCTTGGCTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCTTGGACATTGTTAGGTTGGTTGAGTCACAGCAGACAGATAGGGGTGACCGTCCAACTAAGAAGGTGGTTATCAGTGACTCCGGTGAGCTTCCGATTGCTTGA 756 0.4431 MASSFSIATPTTLTNVPELTIRNRACFNRNSTVSMGGFQNLRRLNLNLNTNGRSPTLRNNKGFSSLVVRASTEEAVVPQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTVENFRALATGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGLDIVRLVESQQTDRGDRPTKKVVISDSGELPIA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0343 251 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 56 248 - -
Lan20g0343 251 MobiDBLite consensus disorder prediction 228 251 - -
Lan20g0343 251 CDD cyclophilin_ABH_like 84 246 - -
Lan20g0343 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 244 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 248 - -
Lan20g0343 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 247 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Lan20g0343 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Lan20g0343 251 Gene3D - 70 250 IPR029000 -
Lan20g0343 251 SUPERFAMILY Cyclophilin-like 77 248 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0343 Lan-Chr20 2383777 2386010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0343 101 245 U-box Gene Family AT5G67530 48.630 4.74e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0343 K03768 - zju:107417611 349.362