Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0332 ATGGATCGAAAGAGGGTAAGACCCGCTTCTCATTTCAACACCAATGGCGCCTCCAAGAAATTCAAGCCAGAAACGGAGTCTTTTACATCTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTACCTCTGGCTGTCCATTTGGCGAGGGATGTCATTTCCTGCATTATGTTCCCGGTGGCATCAAAGCTGTTTCTCAGGTGATAAATGTCGGTAACAGTCCTGCTATTCCACAAGGTGGTAGAAATCCAGCTGCTCCACCATCCTTCCCAGATGGGTCTTCTCCCCCAGCTGTTAAAACCCGATTGTGCAAAATGTATAATTCAGCTGGAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAACCTACAGCCCCATCGTATGAAGATCCTCGTGGCTTTGGACAAATGCAAAGCAACAGGATTCCTGGTCGAGTTGAGCCCCCACCTCAAGCTCATGGAGCTGCCGCTGGCTTTGGAGCCTCAGCTACTGCAAAGATTAGTATCAATGCATCTCTAGCTGGTGCTGTCATTGGAAAAAATGGCATCAACTCTAAGCAAATTTGTCGCGTAACTGGAGCAAAACTTTCTATTAGGGACCATGACTCAGATCCTAACCTTAGGAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCAATGGTTCATGAACTTATTCTAAATGTTAGTTCTGCTGCCACTGGACCTCCAATGAAAAACTTTACTTCACAGACTTCTGCCCCAGCAAATAACTTCAAGACTAAAATGTGTGAAAACTTTGCTAAAGGCTCATGCACATTTGGGGACAGGTGCCACTTCGCCCATGGACCAAGTGAACTACGCAAGACTGGAATGTGA 900 0.46 MDRKRVRPASHFNTNGASKKFKPETESFTSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQVINVGNSPAIPQGGRNPAAPPSFPDGSSPPAVKTRLCKMYNSAGGCKFGDKCHFAHGEWELGKPTAPSYEDPRGFGQMQSNRIPGRVEPPPQAHGAAAGFGASATAKISINASLAGAVIGKNGINSKQICRVTGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSAATGPPMKNFTSQTSAPANNFKTKMCENFAKGSCTFGDRCHFAHGPSELRKTGM* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0332 299 MobiDBLite consensus disorder prediction 11 34 - -
Lan20g0332 299 Gene3D K Homology domain, type 1 166 261 IPR036612 GO:0003723
Lan20g0332 299 Gene3D - 262 297 - -
Lan20g0332 299 Gene3D - 95 132 - -
Lan20g0332 299 Pfam KH domain 175 237 IPR004088 GO:0003723
Lan20g0332 299 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Lan20g0332 299 SMART kh_6 171 241 IPR004087 GO:0003676
Lan20g0332 299 CDD KH-I 176 237 - -
Lan20g0332 299 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lan20g0332 299 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 298 - -
Lan20g0332 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 243 IPR036612 GO:0003723
Lan20g0332 299 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Lan20g0332 299 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Lan20g0332 299 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lan20g0332 299 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Lan20g0332 299 MobiDBLite consensus disorder prediction 77 97 - -
Lan20g0332 299 SUPERFAMILY CCCH zinc finger 265 295 IPR036855 GO:0046872
Lan20g0332 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Lan20g0332 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Lan20g0332 299 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lan20g0332 299 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 298 - -
Lan20g0332 299 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Lan20g0332 299 SUPERFAMILY CCCH zinc finger 99 131 IPR036855 GO:0046872
Lan20g0332 299 MobiDBLite consensus disorder prediction 1 34 - -
Lan20g0332 299 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0332 Lan-Chr20 2284939 2289663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0332 28 139 C3H Transcription Factor Family AT1G68200 26.786 2.52e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan20g0332 KH_1 7.5e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0332 - - gmx:100818781 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0570 8 7883869 7887701 Lan20g0332 20 2284939 2289663 LSH
Lan20g0332 20 2284939 2289663 Lan4g1568 4 24725275 24730262 LSH