Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0316 ATGGACGCCAGAAATTTTCACCATCGTCCTTCTCATCTGGCACATGCTTCTCCTCCTGGTTACTTTGCCCGCCTGGAGAATTCAAATCGCAGCAAAGACAATTTAAATATGAATAAGAAGACAAGGATGCGTCGGTGGCTTTGCTGTACTTTTCAGGTGGAAGAGACTTACCCATCAAATGAAAATGAGCATCTGAAAAGCCCAGGAAATTATGGAGATGGCAACCACAAAGGCTCAAAGGCATCAGCTCCTATCAAACTTGAAACACAGAAGGCACCACCTCCCATTGAAGTTCCAGCGTTATCTTTAGATGAGCTGAAAGAAAAGACTGACAACTTCGGATCAAAGGCGTTGATTGGTGAAGGATCATATGGAAGGGTGTATTATGCAACCTTGAACAACGGAAAAGCTGTGTCTGTGAAAAAGCTTGATGTTTCATCGGAACCTGAAACAAATAATCAGTTTTTGACTCAGGTTTCCATGGTCTCAAGATTGAAAAATGACAATTTTGTTCAGTTGCAAGGTTATTGTATTGAAGGAAATCTCCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGGCCAACTCTTGATTGGATAGAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTAGAATATTTACACGAGAAAGTTCAACCACCTGTTATTCACAGAGATATCAGATCCAGTAATGTGCTTATCTTTGAAGATTACAAGGCTAAGATAGCTGATTTTAACCTATCAAATCAGGCTCCTGACATGGCTGCACGCCTTCATTCCACTCGAGTGCTGGGAACTTTTGGGTATCATGCTCCAGAATATGCAATGACTGGCCAGTTGACTCAGAAGAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCTCGTGGACAGCAAAGTCTTGTCACATGGGCTACCCCCAGATTAAGTGAGGATAAAGTTAAACAATGTGTCGACCCAAAATTGAAGGGAGAATATCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGTGTGCAGTATGAAGCAGAGTTTAGGCCAAACATGAGCATTGTTGTAAAAGCACTCCAACCACTTTTGAAGGCTCCCGCACCTGCTGCCCCAGAAAGTTGA 1218 0.4319 MDARNFHHRPSHLAHASPPGYFARLENSNRSKDNLNMNKKTRMRRWLCCTFQVEETYPSNENEHLKSPGNYGDGNHKGSKASAPIKLETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVSVKKLDVSSEPETNNQFLTQVSMVSRLKNDNFVQLQGYCIEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIERVRIAVDAARGLEYLHEKVQPPVIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPAPAAPES* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0316 405 Gene3D Transferase(Phosphotransferase) domain 1 191 400 - -
Lan20g0316 405 MobiDBLite consensus disorder prediction 1 37 - -
Lan20g0316 405 ProSiteProfiles Protein kinase domain profile. 113 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0316 405 Pfam Protein tyrosine and serine/threonine kinase 118 391 IPR001245 GO:0004672|GO:0006468
Lan20g0316 405 Gene3D Phosphorylase Kinase; domain 1 86 189 - -
Lan20g0316 405 SUPERFAMILY Protein kinase-like (PK-like) 95 391 IPR011009 -
Lan20g0316 405 MobiDBLite consensus disorder prediction 59 81 - -
Lan20g0316 405 SMART tyrkin_6 113 391 IPR020635 GO:0004713|GO:0006468
Lan20g0316 405 ProSitePatterns Tyrosine protein kinases specific active-site signature. 241 253 IPR008266 GO:0004672|GO:0006468
Lan20g0316 405 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 29 404 - -
Lan20g0316 405 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 29 404 - -
Lan20g0316 405 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0316 Lan-Chr20 2172297 2175785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0316 47 392 Receptor kinase-like Gene Family AT4G02010 45.845 1.28e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lan20g0316 PK_Tyr_Ser-Thr 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0316 K13436 - mnt:21407434 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0577 8 7927553 7933396 Lan20g0316 20 2172297 2175785 LSH
Lan20g0316 20 2172297 2175785 Lan4g1573 4 24750559 24754873 LSH