Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0306 ATGCCGCCGAAGCTTCGTAGTGGAGTGCGGCGCGGTCGTGCTGCGGTTGCAAAGGAAGGTTTGGAACCACCGAAAAGAAACACAGCGAAGAACGCTAAGAAGAAGAAAGAAGAGGTTGTACCCGTAGCCGTTAACGTTAACGTGAACGCGATGGCTGATGCTAGTGGTGGATTAAGTGCTAATAAGGGTGTTGCTCCAGAGGATCCAGTTTTTCCTGAAAAGGTTCAAGTAGGAGGATCACCTATGTACAAGGTCGAGAGGAAACTGGGTAAAGGTGGTTTTGGTCAGGTTTTTGTTGGCCGTCGTGAGCGGGCTGGCCCCGGAGCTGTCGAGGTGGCTCTGAAATTTGAACATAGGAACAGTAAAGGATGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTATAACACCCTTGGTGGCAGTCACGGAATACCAAAAGTACACTACAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGATATGCTTGGACCAAGTTTGTGGGATGTGTGGAATTCCTCAAGCCAGACGATGTCTAGTGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCGATACTGGAAAAGATGCACTCCAGGGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTATTGGGTCAGCCAGCTACAGCACAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCGACAAAATGGAGAGACACCTCCAGTGGCCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACAGTTCGATATGCTAGTGTTCATGCTCATTTGGGACGAACTGCTAGTAGAAGGGATGATCTCGAATCTCTTGCATACACACTTATTTTCCTTCACAAAGGCCGATTACCATGGCAAGGTTATCAGGGTGATACCAAGTCCTTCCTTGTTTGCAAAAAGAAGATGGGGACATCTCCTGAGATGCTATGCTGCTTTTGCCCTTCTCCTTTCAGACAGTTTCTTGAGGCTGTGGTGAGCATGAAATTTGATGAAGAGCCTAACTATGGCAAGTTAATTTCTTTGTTTGATGGTATAGTCGGACCTCCAGCATTGCAGCCAGTTAATACTGATGGTGCTCAAAAGGTTGGGCAAAAGCGGAGTAGATTGAATATTGAGGAAGATGATGATTCACAGCCCAAGAAGAAGGTTCGTTTAGGGGTTCCTGCTATGCAATGGATTTCGATTTACAATGCAAGACTACCAATGAAACAAAGGTATCATTACAATGTGGCTGATACAAGATTAGCACAGCATATTGAGAAAGGGATTGCTGATGGTCTTCTTATTAGTTGTGTGTCTTCTTGTTCTAATCTTTGGGCACTTATTATGGATGCTGGAACTGGTTTTACACATCAAGTTTACAAGTGGTCACCTGTTTTCTTACACAAGGAATGGATCATGGAGCAATGGGATAAGAGTTATTACATTACTTCTATTGCAGGGTCTGTTAATGGTGCCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACCCAACAATCATACAAAGTGAGTGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTCATGTCTCGCAATGCTGGATACAGTGATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGCATTCATAGACGTTGGGATAATGGTTATAGGATTACAGCAACTGCTGCCACGACGGATCAATCTGCTCTTATACTAAGTATTCCGAGGCGTAGGCCTGGGGATGAAACTCAGGAAACTCTCCGTACATCTCAATTTCCGAGCACACATGTTAAGGATAAATGGTCAAAAAATCTATATTTGGCCTGTTTGTGCTATGGGCGCACAGTATGCTGA 1917 0.4424 MPPKLRSGVRRGRAAVAKEGLEPPKRNTAKNAKKKKEEVVPVAVNVNVNAMADASGGLSANKGVAPEDPVFPEKVQVGGSPMYKVERKLGKGGFGQVFVGRRERAGPGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTMSSEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDTKSFLVCKKKMGTSPEMLCCFCPSPFRQFLEAVVSMKFDEEPNYGKLISLFDGIVGPPALQPVNTDGAQKVGQKRSRLNIEEDDDSQPKKKVRLGVPAMQWISIYNARLPMKQRYHYNVADTRLAQHIEKGIADGLLISCVSSCSNLWALIMDAGTGFTHQVYKWSPVFLHKEWIMEQWDKSYYITSIAGSVNGASLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWDNGYRITATAATTDQSALILSIPRRRPGDETQETLRTSQFPSTHVKDKWSKNLYLACLCYGRTVC* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0306 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Lan20g0306 638 MobiDBLite consensus disorder prediction 1 37 - -
Lan20g0306 638 ProSitePatterns Protein kinases ATP-binding region signature. 89 115 IPR017441 GO:0005524
Lan20g0306 638 SMART serkin_6 83 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0306 638 Pfam Protein kinase domain 83 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0306 638 PANTHER CASEIN KINASE I-LIKE PROTEIN 62 611 - -
Lan20g0306 638 ProSiteProfiles Protein kinase domain profile. 83 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0306 638 SUPERFAMILY Protein kinase-like (PK-like) 83 355 IPR011009 -
Lan20g0306 638 MobiDBLite consensus disorder prediction 376 390 - -
Lan20g0306 638 MobiDBLite consensus disorder prediction 12 37 - -
Lan20g0306 638 MobiDBLite consensus disorder prediction 366 390 - -
Lan20g0306 638 PANTHER CASEIN KINASE-RELATED 62 611 - -
Lan20g0306 638 CDD STKc_CK1 82 352 - -
Lan20g0306 638 Gene3D Transferase(Phosphotransferase) domain 1 59 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0306 Lan-Chr20 2069182 2078525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0306 7 234 AGC Kinase Gene Family AT1G03920 24.481 4.19e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lan20g0306 Pkinase 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0306 - - lang:109336071 1250.73