Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0305 ATGGCAACAACAGCATCTGGTGCTAGTAAGAGTCTATTACCAATGGAAGAAGCAGTACCAGCTTCGAGCTATCGTGCATATCCCATCCCTCTTGCAAAATATGAGGAGGTTGTTGAGAATCCCAATACCTTCATGTTTACCTTGGAGAAGCTCCATGCGGAAATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAACTAAATTTGCATCATCTTTTTGTTCAAGTGACTTGTCGTGGAGGGCTTGAGAAGGTAATTAAAGATAGAAAATGGAAAGAAGTAAATGCAACTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTATGCTGCGGAAGTATTATACTTCTTTGATTTTCCATTATGAACAAGTGTACTACTTTAAATCCCTTGGATGGGCCCCTCCTCCTACTTCTGATGCTCTGCCGAGTCAACCAACCATGCCATCTCCTGCTCCACAGATGCAGTCTCCGCAGATTCAGTCAAGTTCCAATGTTGCTGAATTGCCTGAAGCGATGGCAGCATCTTCTGCAAGTTCTGCAGCAATCGGGGTCATTGAAGGGAAATTTGAACTTGGTTATCTGGTTACTGTGACAATAGGTTCAGAGAAACTCAAAGGGATTCTTTATCATCCTCCAGAAAACAGCACATTTTCAGCACCCCATCCCATTGTTTTGATTAATAATGATAATGTCTCTTCTCCATCGGGTGTCCGTCGTCGCCAACGCCGGAAGAAATCAGAAATAAAACGGAAAGATCCTGCTCACCCAAAACCCAACAGAAGTGGTTACAATTTCTTCTTTGGAGAACAACGTGCAAGACTAAAATCACTAAACCAAGTGAAGGACAAGGACATTAGTCGGGTGATTGGTGATCTCTGGAACAAGTTAAACGAACCGGAAAGAGCAGTTTATCAAGAGAGGGCTGCGAAGGATAAAGAGAGGTACAAAACAGAAATGGAGGATTATCACAAGAAACTGAAGCCGGATCAAGTTATCAGCGATGCTGAGCCGTCGCAACAAGGACTTCCCGAACATGATACTGACATGGTTGATGCTGTAGCTGATGCCAACTCTTTTCAAACTCCGGAGGAGAGCAGCTCTGATGAAGGCGAACATGAAGACGGTAAAACGAATGAGAATGATTTTGATATGGATGCATCACAATCACATGATAAAGGAGGATCTAGTTGCTCGGGTTCAGAGAAGTAA 1218 0.4302 MATTASGASKSLLPMEEAVPASSYRAYPIPLAKYEEVVENPNTFMFTLEKLHAEMGTKFMIPIIGGRELNLHHLFVQVTCRGGLEKVIKDRKWKEVNATFNFPSTATNASFMLRKYYTSLIFHYEQVYYFKSLGWAPPPTSDALPSQPTMPSPAPQMQSPQIQSSSNVAELPEAMAASSASSAAIGVIEGKFELGYLVTVTIGSEKLKGILYHPPENSTFSAPHPIVLINNDNVSSPSGVRRRQRRKKSEIKRKDPAHPKPNRSGYNFFFGEQRARLKSLNQVKDKDISRVIGDLWNKLNEPERAVYQERAAKDKERYKTEMEDYHKKLKPDQVISDAEPSQQGLPEHDTDMVDAVADANSFQTPEESSSDEGEHEDGKTNENDFDMDASQSHDKGGSSCSGSEK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0305 405 MobiDBLite consensus disorder prediction 141 160 - -
Lan20g0305 405 MobiDBLite consensus disorder prediction 141 155 - -
Lan20g0305 405 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 395 - -
Lan20g0305 405 MobiDBLite consensus disorder prediction 368 391 - -
Lan20g0305 405 CDD HMGB-UBF_HMG-box 259 323 - -
Lan20g0305 405 ProSiteProfiles ARID domain profile. 38 129 IPR001606 GO:0003677
Lan20g0305 405 Gene3D High mobility group box domain 243 343 IPR036910 -
Lan20g0305 405 MobiDBLite consensus disorder prediction 327 405 - -
Lan20g0305 405 Gene3D - 30 133 IPR036431 GO:0003677
Lan20g0305 405 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 395 - -
Lan20g0305 405 CDD ARID_HMGB9-like 40 125 IPR045303 GO:0003677
Lan20g0305 405 SMART hmgende2 258 327 IPR009071 -
Lan20g0305 405 SUPERFAMILY HMG-box 247 333 IPR036910 -
Lan20g0305 405 SMART bright_3 39 130 IPR001606 GO:0003677
Lan20g0305 405 SUPERFAMILY ARID-like 36 137 IPR036431 GO:0003677
Lan20g0305 405 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 259 326 IPR009071 -
Lan20g0305 405 Pfam ARID/BRIGHT DNA binding domain 42 125 IPR001606 GO:0003677
Lan20g0305 405 SMART ARID_2 35 125 - -
Lan20g0305 405 Pfam HMG (high mobility group) box 259 325 IPR009071 -
Lan20g0305 405 MobiDBLite consensus disorder prediction 231 266 - -
Lan20g0305 405 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0305 Lan-Chr20 2062797 2065895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0305 30 355 ARID Transcription Factor Family AT1G04880 55.848 6.89e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan20g0305 ARID 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0305 - - gmx:100807028 449.129