Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0304 ATGGCGAAAACGAACTCATCTCAGGGAATGAAGAGAGTTGATGCTGTTGATTCTCGTTCTGCTTCTGCTCTTGTTCGAGGCAAAGACGGAAGTGCTTTCACTCGATGTGAAGAGTGCAAAAAGGATGTTCCTGTAGCACTCATCAGCATGCATAGTTGCAGCTTGGAAGCTAAGATTAAAATGAATCTTGACTCTCAAGTTGTGGAGGCTGGTGCTGAAGTGAAGAAACCAGAGAGGAAGAAGCCAAAATCTAAAGAACCAAATGCTAAAAGAGCTAAAGCAGAAAAGGTGAAGAAGGTTAAGGATCCTAACATGCCTAAGCGTCCTGCAACAGCCTTTTTTCTCTTTTTGGACGACTTTAGAAAATCTTTTAAAGAAGAGAATCCTGATTCTAAAGATGTTAAAAGGGTAGGTAAAGAGGGTGGTGAGAAGTGGAGATCAATGACCGATGAGGAGAAGAAGCCTTATTTAGATAAATTTGCTGAACTCAAAGTAGAGTATGAGAAGGCTATGGAAACCTATAAGTCTCCTGGAAATGGGGAAGAGGAACAGGCAGGTTCAGACAAATCTGATAAGGAAGCTGCTCCAGCTGAAGTGGAAGAGTTAACTGATGAGGAGTAG 621 0.4203 MAKTNSSQGMKRVDAVDSRSASALVRGKDGSAFTRCEECKKDVPVALISMHSCSLEAKIKMNLDSQVVEAGAEVKKPERKKPKSKEPNAKRAKAEKVKKVKDPNMPKRPATAFFLFLDDFRKSFKEENPDSKDVKRVGKEGGEKWRSMTDEEKKPYLDKFAELKVEYEKAMETYKSPGNGEEEQAGSDKSDKEAAPAEVEELTDEE* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0304 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 195 - -
Lan20g0304 206 SMART hmgende2 105 176 IPR009071 -
Lan20g0304 206 MobiDBLite consensus disorder prediction 172 206 - -
Lan20g0304 206 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 106 175 IPR009071 -
Lan20g0304 206 SUPERFAMILY HMG-box 97 179 IPR036910 -
Lan20g0304 206 MobiDBLite consensus disorder prediction 70 105 - -
Lan20g0304 206 Gene3D High mobility group box domain 89 191 IPR036910 -
Lan20g0304 206 MobiDBLite consensus disorder prediction 71 105 - -
Lan20g0304 206 CDD HMGB-UBF_HMG-box 106 172 - -
Lan20g0304 206 MobiDBLite consensus disorder prediction 1 21 - -
Lan20g0304 206 MobiDBLite consensus disorder prediction 182 197 - -
Lan20g0304 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 195 - -
Lan20g0304 206 MobiDBLite consensus disorder prediction 125 153 - -
Lan20g0304 206 Pfam HMG (high mobility group) box 106 175 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0304 Lan-Chr20 2060454 2062088 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan20g0304 HMG_box 1.3e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0304 K25507 - gmx:100810345 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0304 20 2060454 2062088 Lan20g0304 20 2060454 2062088 ECH