Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0297 ATGAAGAGAGAAAGAGAAATTGATAGCACAACCATGGCCAACTATTTGATGTTACTTTCAGGTGGAGGTGAATTTGAGACAACCTACTTCAACTCTTCCAACAACAACAACAACCGTGTGTTCGAGTGCAAGACATGTAACCGCCAATTCCCGTCGTTTCAAGCACTAGGTGGCCACCGTGCTAGCCACAAGAAGCTAAGGTTGTCGGGAGAAGGGGACCAAATGGTTAATGATTCAACTCCAAAGCTTAAAACACATTTGTGTTCTATTTGTGGTTTGGAATTTGCAATAGGGCAAGCTTTGGGAGGCCATATGAGGCGTCATAGAGTAGCAACTAATTCAAATGTTAACATGCAAAGTTCTATTACAACTACGAGTAGTGGTAGCGGTGGTGGTGGTGGTGATAATGGTGATGGTAGCAGCGATGATACGAAGATTGAGAAGGGAAATAGCAAGAGAGTTTTATTTTTGGATTTGAATTTAACACCATTAGAGAATGATATGGAGATTTTGAAGATTAGGCAGACAATTCCTTTGGTGGATTGTTTCAATTGA 555 0.4108 MKREREIDSTTMANYLMLLSGGGEFETTYFNSSNNNNNRVFECKTCNRQFPSFQALGGHRASHKKLRLSGEGDQMVNDSTPKLKTHLCSICGLEFAIGQALGGHMRRHRVATNSNVNMQSSITTTSSGSGGGGGDNGDGSSDDTKIEKGNSKRVLFLDLNLTPLENDMEILKIRQTIPLVDCFN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0297 184 MobiDBLite consensus disorder prediction 112 134 - -
Lan20g0297 184 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lan20g0297 184 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lan20g0297 184 Gene3D Classic Zinc Finger 39 108 - -
Lan20g0297 184 PANTHER ZINC FINGER PROTEIN ZAT12 11 181 - -
Lan20g0297 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Lan20g0297 184 PANTHER ZINC FINGER PROTEIN ZAT5 11 181 - -
Lan20g0297 184 SMART c2h2final6 41 63 IPR013087 -
Lan20g0297 184 SMART c2h2final6 86 108 IPR013087 -
Lan20g0297 184 MobiDBLite consensus disorder prediction 112 146 - -
Lan20g0297 184 SUPERFAMILY beta-beta-alpha zinc fingers 39 108 IPR036236 -
Lan20g0297 184 Pfam C2H2-type zinc finger 86 109 - -
Lan20g0297 184 Pfam C2H2-type zinc finger 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0297 Lan-Chr20 2021621 2022421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0297 12 167 C2H2 Transcription Factor Family AT2G28710 45.513 2.17e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0297 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0297 - - pvu:PHAVU_008G014600g 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1388 11 21475215 21475894 Lan20g0297 20 2021621 2022421 LSH
Lan20g0297 20 2021621 2022421 Lan4g1589 4 24935307 24935946 LSH