Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0272 ATGCCTGACAATGTGGACCCTATTCATGATTTCATCAACTCAACTTGGAGGTTTTGTTCTCTTCTAGGTGGTTTGGTTTCTGGTTTAATATCAAAGCCTTATACAAAATTGGTTGGCTCAGCCTTTCATGGTTCTCTTTCTAGTTTGACTGAGGAAAGAGAAAATTGTAATTTTAAGTTCATGGAAAATTATATATGTCTTAGTTCATCGGATGACGAAATAGAGGAGATAGAAGATCCAAGGAGGTCTCTCCCACAATGGGATGCTCCTGAAAGAAATTCAGATAATGGCTGGTGGTCTAATCTGGATAGTAGTTCTCCAAGAGGAGCAAATACTTCAAATAATCATTCACAAATCAGACCTCACACTCAACCCTCTTCCAGCAACAATTCACTGAATCACAGATTTGCACAAAGGGATGAACCTTCCTATCGTACCGAGAATGGAAACTCAAGTCAGATTCAGATGGTCAACACACGAACTTCTAATACTTCTGGTTCTGATCATGAGAAAATGCCATCTCAACACGCTTTCAAGAGGAACCTTCCGTTGTCTCTTCAACCATCAGTAACAAAGGGTCTTCCATCTTCATCATTTCCGCCAGATATCAGATCAAACAACTTAAAAAAGCACACGAACAGCAGTCAATTTCATGATACATATAAGAATCGTCGCCATGCAGTGGGGTCTAGCATGACCGGTGACAAGAGCTACCTACGTGACAATTATAACAGGGTAAATGATGAAGATCGTCTTATGTTTCCAAATGGTGGGAGTAGGATTCTTCCTTCATCTTTGGCATATGGCAAGGCTAAAAATTCTCAGTTCACCAGTTCCACTGAAGCTGCATACCGTTCTGGAACAGTTGATGAAAGGGCTTCTGCAACTGACGAGAGACTTATTTATGAGGCAGCATTACAGGATCTCTATCGATCAAAAACGGAAACCGACTTACCTGATGGTCTAATGTCTGTCTCTCTTCTGAGGCATCAGAAAATTGCATTAGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGTATTTTGGCCGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTTATCCTAATGCAGAAGTCATTGCAGTCAAGATCAAAGACAGATGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGATGATGACGATGATAATGGTATTGCTGATGTGGATAATCTTAAAAAGAATGAAGAATTTGATGATATTAAACCTGTTACAGAACCAAGCAGTTCGACACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACGCTGGTTGTCTGCCCTGCAAGTGTTGTTCGGCAGTGGGCCAGGGAGCTTGATGAGAAAGTTGGAAATGAAAAGCTTTCTGTTCTAATTTATCATGGGGGCAGTAGGACAAAAAATCCCGATGAGCTTGCAACATATGATGTGGTTATCACAACATACGCTATTGTGACTAATGAAGTTCCAAAGCAACCATTAGTGGACGAGGATGAATTTGATGAAAAAAATGGTGAAAGATTTGGGCTATCTTCTCAATTTTCTGCAAGTAAAAAGAGGAAAAAGGCATATAATGGAAATAAGAAGAGTAAAAAGGGTAGAAAGGGAATTGACAGCTCTCTCGATTGTGGCTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGATTATTCTTGATGAAGCTCAAACAATCAAGAATCATAGAACTCAGGTCGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATCCAAAATACTATTGATGATCTGTATAGCTATTTTAGGTTCCTAAGGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATTAAAGTTCCAATATCCAGAAATTCTATCCAAGGTTACAAGAAGCTTCAAGCAGTGTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGATTGATGGACAGCCAATAATCAATTTGCCCCCTAAAAAAATTGAGCTGACTAAGGTGGATTTCTCTGGTGAGGAGCGGGCCTTCTACGCCAAGTTGGAAGCAGATTCACGTTCTCAATTCAAGGCATATGCTGCTGCTGGCACAGTGAATCAGAACTATGCAAATATTCTTCTGATGCTTTTACGACTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATTATAATTCCAATCCTGTCGGACAGGATTCTGTTGAAATGGCAAAAAGGCTTCCAAGGGATTTGGTGACTAATCTATATATGGAATTGGATACAACCTCTGCTATCTGCCATGTTTGCAATGATCCACCTGAAGACCCTGTTATTACCATGTGTAGCCACGTCTTCTGTTATCAATGTGTATCAGACTTTTTGACAGCTGATAATAATACTTGCCCCGCAGTTTATTGTAAAGAAACAGTCGGTGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGCTGCTTCTCTGATGATCTTGGTGGCAGTAGTTCCTCAAATTCACATCATGTTGATTATTCACTATTTCAGGAAAGTGAGTATAACTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCAGTCAAATTGTAAAATGAAGGCTCCTAGTTCTGGCTCACCGAATTCCTCTGGAGGCCATGGGGATTTACTGTCTTCTGATATTTCATATATTGAAGATTGCGATTCAGATATCCAGGTTACAAAATACACAAGAAAGTATTCAGAGCCCATGACTGAAGGACCAATAAAGTCTATAATTTTTTCCCAGTGGACTAGTATGTTGGACTTAGTCGAGGATGCACTGAAGCAATCTCGAACTCGTATACGATACAGGAGACTTGATGGTAGGATGACTCTACTTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGCAACCTTGGGTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAACCCAACGACTGAGGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGACTCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAGATGGTTGCATCTGCCTTTGGTGAAGATCATGCTGGCGGTACTGCTACCCGCCTCACAGTGGATGATCTCAAATATCTTTTTATGGTCTAG 3240 0.4086 MPDNVDPIHDFINSTWRFCSLLGGLVSGLISKPYTKLVGSAFHGSLSSLTEERENCNFKFMENYICLSSSDDEIEEIEDPRRSLPQWDAPERNSDNGWWSNLDSSSPRGANTSNNHSQIRPHTQPSSSNNSLNHRFAQRDEPSYRTENGNSSQIQMVNTRTSNTSGSDHEKMPSQHAFKRNLPLSLQPSVTKGLPSSSFPPDIRSNNLKKHTNSSQFHDTYKNRRHAVGSSMTGDKSYLRDNYNRVNDEDRLMFPNGGSRILPSSLAYGKAKNSQFTSSTEAAYRSGTVDERASATDERLIYEAALQDLYRSKTETDLPDGLMSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALILMQKSLQSRSKTDDACNHKTEALNLDDDDDNGIADVDNLKKNEEFDDIKPVTEPSSSTRAPSRKRPAAGTLVVCPASVVRQWARELDEKVGNEKLSVLIYHGGSRTKNPDELATYDVVITTYAIVTNEVPKQPLVDEDEFDEKNGERFGLSSQFSASKKRKKAYNGNKKSKKGRKGIDSSLDCGSGPLAKVGWFRIILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKKIELTKVDFSGEERAFYAKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSNPVGQDSVEMAKRLPRDLVTNLYMELDTTSAICHVCNDPPEDPVITMCSHVFCYQCVSDFLTADNNTCPAVYCKETVGEDVVFSKATLRSCFSDDLGGSSSSNSHHVDYSLFQESEYNSSKIKAVLEILQSNCKMKAPSSGSPNSSGGHGDLLSSDISYIEDCDSDIQVTKYTRKYSEPMTEGPIKSIIFSQWTSMLDLVEDALKQSRTRIRYRRLDGRMTLLARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0272 1079 MobiDBLite consensus disorder prediction 77 175 - -
Lan20g0272 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 906 1074 IPR001650 -
Lan20g0272 1079 ProSiteProfiles Zinc finger RING-type profile. 771 807 IPR001841 -
Lan20g0272 1079 Pfam Helicase conserved C-terminal domain 923 1021 IPR001650 -
Lan20g0272 1079 SMART ring_2 771 809 IPR001841 -
Lan20g0272 1079 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 111 1078 - -
Lan20g0272 1079 Pfam Zinc finger, C3HC4 type (RING finger) 771 807 - -
Lan20g0272 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 823 IPR013083 -
Lan20g0272 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 655 IPR027417 -
Lan20g0272 1079 Gene3D - 524 667 IPR038718 -
Lan20g0272 1079 Gene3D - 301 387 IPR038718 -
Lan20g0272 1079 CDD DEXDc_SHPRH-like 327 655 - -
Lan20g0272 1079 MobiDBLite consensus disorder prediction 528 547 - -
Lan20g0272 1079 SMART ultradead3 323 634 IPR014001 -
Lan20g0272 1079 Gene3D - 670 1078 IPR027417 -
Lan20g0272 1079 SUPERFAMILY RING/U-box 765 808 - -
Lan20g0272 1079 Pfam SNF2-related domain 330 732 IPR000330 GO:0005524|GO:0140658
Lan20g0272 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 617 IPR014001 -
Lan20g0272 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 1078 IPR027417 -
Lan20g0272 1079 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 111 1078 - -
Lan20g0272 1079 ProSitePatterns Zinc finger RING-type signature. 786 795 IPR017907 -
Lan20g0272 1079 CDD SF2_C_SNF 920 1031 - -
Lan20g0272 1079 MobiDBLite consensus disorder prediction 89 171 - -
Lan20g0272 1079 SMART helicmild6 936 1021 IPR001650 -
Lan20g0272 1079 Gene3D - 423 510 IPR038718 -
Lan20g0272 1079 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0272 Lan-Chr20 1838320 1848230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0272 61 979 RAD5 or RAD16-like Gene Family AT1G50410 55.016 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan20g0272 SNF2_N 2.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0272 - - lang:109335781 2096.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0272 20 1838320 1848230 Lan20g0272 20 1838320 1848230 ECH
Lan8g0622 8 8508018 8519232 Lan20g0272 20 1838320 1848230 LSH
Lan20g0272 20 1838320 1848230 Lan4g1608 4 25051935 25061586 LSH