Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0256 ATGGAGGCGAATCAATCTCTTCAAGAGAACTCGGAATCGTTCGATTTGAACACTCAGAAACAAGAAGAGGACATTGTTATCCACAACGGTGAAGGTTCTGTTTCTGCAGTGTTGGAAACCAAAGAATGTGATTCAAAGGCACAAGGCTGTTCTGTTCAAGCTCCGAAAAAGAAGCGTGGAAGAAAATCTAATGCGGAGAGAGAAGCGATGAAGTTGAAGGAAAAGGTAGATGATGATAACGTAGCTGCTTCTGTTATTGAAACGCGTGGTATAAGGTTGAATACTCTGAATGAAGGTGTAGAAGAAGACGAGTCTGAAGGAGTAAATGGTGGCACTGTGAAGAAGAGACGGGGTAGAAAAAGAAAAACCCTAGGCAAAGGTGAAGCTAGTGATGCAAAAGCAAAAGATGAAGCTAATGGTGAAGAGATTTTTAAGGATGGCCATGAAGAACAGAGTGGCTTTTCGAAGCAGAGTCGTCGTGGTAGAAAACGGAAAACCTCCAACAATGATGATGAAGCTAGTGATGCAAAGGTGGAAGATGGATCTAATGGTGAATCTGAAATGCCTTCAGAGAGCACCACTCAGAGACGCAGCTTAAGAAGTGCTCGTAGACACAGTAATACACCAGAGACTCTAAAAGTCAAGAGAAATGTTAAATTTACTGAAGAGGAATGCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCGAGGTTGTGAGGTGCACACGTTGTAAGCGCAAAAGATATTGCTTGTTCTGTTTGAAAAATTGGTATCCTGAATGGAAAAATGATGATGTTGCCGAGGCATGCCCTGTGTGCCGTGGTAATTGTAATTGCAAAGCATGCTTGCGGTCTGATGAACTTATTAAGAAAATGAAGGAAGAGGCGAAAAAGAAGAGGTATGAAGGTAATGAAGTTGAGCTCTCTAAGTATTTGCTGATACGACTTCTTCCATTTGTAAGACAGTTGAATGAAGAGCAAATGCTTGAGTTGGGTCTAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTAAATATTGAAAAGGCAGAATACTCAGCGAAGGAGCGTGTCTACTGCGACAACTGCAAAACATCAATATTCGATTACCACAGAAGCTGTAGAAAATGCTCTTTTGACCTATGTCTCACCTGTTGCCACGAGCTTCGTAATGGGCAGCTTCTAGGTGGTGCTGATCCAGTTGAGTGGGAATTTATCAAATGCAGTCTTGATTATCTGCATGGAGGAAAAAAAAAGGAAAAGGTAAAGGAGTCCGAGATACATGAATTACCTGCTGATCCTGAGCCTGACATTCGTGGATGGTCAAGATCTGGGTGGCATGCAGAAAGTGATGCTAGCATTCCCTGTCCAAAGGTCAATGATGTGTGCTGCCATAGTTTTCTTGAGTTGAAGAGCATTTTTGGTCAGGCCTTTATTTCAGAGTTAGTATATAAAGCAGAAGAACTAGCAAAATCATATAAGGTTCAAAATGCAATTGAGACTCCTGACAATTCGTGTTCTTGTCCGAAGATCTGTAAAAACACAGATGTTAGAAATAATATGAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTGGTTATATTGTCCTAGGGCTGTTGATTTGCAACCTGTGGATTTAAAGCATTTTCAATGGCATTGGAACAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGTTGGGAACCGCTAGTGATGTGGCGTGCTTTCCGTCAAATAACTAATACCAAGCATGGTCAACATTTGGATGTGAAGGTCTTGGATTGCTTAGATTGGTGTGAGGGAGAGATCAATATCCATCAATTCTTTACAGGGTATACAAAGGGTCGGTATGATTGGAAAGATTGGCCTCAGATCCTAAAATTGAAAGATTGGCCCCCTTCTAATTTATTCGAGGAACGTTTACCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCCTATAAAGAATATACAGATCCTCTCAGAGGTGCTCTTAACCTCGCTGTGAAGTTACCTGAGAAATGTCTGAAGCCAGACATGGGACCAAAGACATACATTGCTTATGGGCTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTTCACTGTGACATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGACGTGAAATTGGAGCATAAAAATTTTGTCGCCATTGATACATTGAAGCTAAGACACCTTGAACAAGATAAGAAGGAGCTGTTTCGAGATGACCAGGAGGGAGAAACTAATGTTGGGATGCCTGCTAGTTCACCCTCTACAGTAGATGATCTTTCAAATGGGTCAGAGTTGCAAGATGTTGAGAAAGTCAAAATGAAACATGAAAGCATGATGTCAATTGGGGAGGATGCTTCAGATGGTGCTCTATGGGATATTTTTCGTAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTTAGAGAGTTTAGGCATGTCCACTGCCGTCCTTTAAATCAGGTTATGCACCCCATTCATGACCAAACCATGTATCTGACGGAGGAGCATAAGAGGAAGCTAAAGGACGAATATGGGATTGAGCCATGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTTATTCCCACTGGCTGCCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCCGATTGACAGAGGAATTCCGCACACTTCCAATAAATCACAAATCTTCTGAGGACAAATTGGAGGTGAAGAAGATGACGGTGTATGCTATGGATAATGTGGTTAAGAAATTGGAGAAAACGAGGTCTGGGGAAACCTAG 2880 0.4198 MEANQSLQENSESFDLNTQKQEEDIVIHNGEGSVSAVLETKECDSKAQGCSVQAPKKKRGRKSNAEREAMKLKEKVDDDNVAASVIETRGIRLNTLNEGVEEDESEGVNGGTVKKRRGRKRKTLGKGEASDAKAKDEANGEEIFKDGHEEQSGFSKQSRRGRKRKTSNNDDEASDAKVEDGSNGESEMPSESTTQRRSLRSARRHSNTPETLKVKRNVKFTEEECLMCHQCQRNDKGEVVRCTRCKRKRYCLFCLKNWYPEWKNDDVAEACPVCRGNCNCKACLRSDELIKKMKEEAKKKRYEGNEVELSKYLLIRLLPFVRQLNEEQMLELGLEAKRQGLSLSELNIEKAEYSAKERVYCDNCKTSIFDYHRSCRKCSFDLCLTCCHELRNGQLLGGADPVEWEFIKCSLDYLHGGKKKEKVKESEIHELPADPEPDIRGWSRSGWHAESDASIPCPKVNDVCCHSFLELKSIFGQAFISELVYKAEELAKSYKVQNAIETPDNSCSCPKICKNTDVRNNMRKAASREDSSDNWLYCPRAVDLQPVDLKHFQWHWNKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITNTKHGQHLDVKVLDCLDWCEGEINIHQFFTGYTKGRYDWKDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPLRGALNLAVKLPEKCLKPDMGPKTYIAYGLAQELGRGDSVTKLHCDMSDAVNVLTHIADVKLEHKNFVAIDTLKLRHLEQDKKELFRDDQEGETNVGMPASSPSTVDDLSNGSELQDVEKVKMKHESMMSIGEDASDGALWDIFRRQDVPKLQEYLKKHFREFRHVHCRPLNQVMHPIHDQTMYLTEEHKRKLKDEYGIEPWTFIQKLGDAVFIPTGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHKSSEDKLEVKKMTVYAMDNVVKKLEKTRSGET* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0256 959 MobiDBLite consensus disorder prediction 764 780 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 59 82 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 124 157 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 758 780 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 1 15 - -
Lan20g0256 959 PANTHER - 22 949 - -
Lan20g0256 959 Gene3D Cupin 536 930 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 1 28 - -
Lan20g0256 959 SUPERFAMILY Clavaminate synthase-like 545 940 - -
Lan20g0256 959 ProSiteProfiles JmjC domain profile. 669 921 IPR003347 -
Lan20g0256 959 ProSiteProfiles Zinc finger RING-type profile. 225 275 IPR001841 -
Lan20g0256 959 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 222 301 IPR018866 -
Lan20g0256 959 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 22 949 IPR045109 GO:0032454|GO:0033169
Lan20g0256 959 Coils Coil 62 82 - -
Lan20g0256 959 MobiDBLite consensus disorder prediction 164 184 - -
Lan20g0256 959 SMART cupin_9 650 921 IPR003347 -
Lan20g0256 959 MobiDBLite consensus disorder prediction 43 213 - -
Lan20g0256 959 Pfam JmjC domain, hydroxylase 804 904 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0256 Lan-Chr20 1751642 1758536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan20g0256 JmjC 3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0256 K15601 - gmx:100805723 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0628 8 8544998 8547419 Lan20g0256 20 1751642 1758536 LSH
Lan20g0256 20 1751642 1758536 Lan4g1628 4 25161926 25183842 LSH