Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0255 ATGCAGGATAACAACGAGAGCAGCGGCACCGGGTTTCATCACCATGCCACGGCGGCGCAATCCCGCCAACACCGCCACAAGCTACAAGTTTACAATGAGGTTCTCCGCCGTCTCAAGGATTCCGGCAACGACGAAGCTATGCAACCTGGCTTCGATGATCAGCTTTGGGCTCACTTCAACCGTCTACCTACACGGTATGCGCTGGATGTGAATGTGGAAAGGGCTGCAGATGTTCTTATGCACAAAAGATTACTGCATTTGGCTCATGATCCTGCTAACAGGCCTGCAATTGAAGTTCGATTAGTCCAGGTTCACCCAATATCGGATGGAAACTCAACTGACTCTGTCGTATCAGATGTTCCTGGGAAAGAATCTGGTCAAAGCTCTTCAAAGTTCTCAAACAGACTGGGTTTACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTAGCACTTGAAGCAAATAATTCTGAAGATATAGAGGAGGAACAATCTGTGAATACTAGTGCACAATATTCACGGCCCATGCATGAAATTACCTTCTCAACAGATGACAAGCCAAAGCTTCTTAGTCAGTTAACTGCTTTGCTTGCTGAAATTGGACTGAACATCCAAGAGGCGCATGCTTTCTCCACAACCGACGGTTACTCATTAGATGTATTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAAGCTTAAAGCAACTTTGGGAAGAGAAGTATTAGTGATTGAGCGGCAGGCATGGTCGGGTCAGCAATCAGAATCTTCTGTTGAGAAGCCTGATCAAGCAGAGGTGAAATGTGAACCTGATCAGTTGACAATACCTAATGATGGGATGGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCGTCTGGGTCATATGGTGAACTATTTAAAGGTATATATTGCAGCCAAGAAGTAGCCATTAAAGTTCTCAAGGCTGAGCATATAAATTCAGATCTGCAGACAGAGTTCGCGCAAGAAGTGTATATCATGAGAAAGGTTCGACACAAGAACGTCGTACAATTCATAGGAGCATGTACAAAGCCCCCACGCTTGTGCATTGTTACAGAATTTATGTCTGGTGGAAGTGTGTATGACTATCTACATAAGCAGAAGGGTTGCTTTAAATTTCCTACACTGCTCAAAGTTGCAATTGATATTTCTAAAGGAATGAACTACTTGCACCAACATGACATAATCCATAGAGACTTGAAGGGTGCCAATCTTTTGATGGACGAAAATGGTGTTGTAAAGGTTGCTGATTTTGGGGTAGCTAGAGTGAAATCTCAATCCGGAGTTATGACAGCAGAAACTGGAACATATCGATGGATGTCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAATTGCTAACTGGAAAGATTCCATACGAATACCTGACCCCTCTACAGGCTGCTATAGGAGTGGTTCAAAAGGGTCTACGACCAACCATCCCTAAGAACACCCATCCAAAGTTTGTTGAGCTTCTTGATAGGTCTTGGCAGCAAGATCCAGCACTGAGACCCGATTTCCCCGAGATTATCGAGATCCTGCAGCAGTTAGCCAAGGAGGTCGGAGATGAAGGAGAGGAGCGGCGCAGGGATAAACCAGGAGGAGGATTTCTGTCTGTCCTGAGACGAGATTAA 1722 0.4437 MQDNNESSGTGFHHHATAAQSRQHRHKLQVYNEVLRRLKDSGNDEAMQPGFDDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLHLAHDPANRPAIEVRLVQVHPISDGNSTDSVVSDVPGKESGQSSSKFSNRLGLHPPPAFGSSPNLEALALEANNSEDIEEEQSVNTSAQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLGREVLVIERQAWSGQQSESSVEKPDQAEVKCEPDQLTIPNDGMDVWEIDPKHLKYGTQIASGSYGELFKGIYCSQEVAIKVLKAEHINSDLQTEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGCFKFPTLLKVAIDISKGMNYLHQHDIIHRDLKGANLLMDENGVVKVADFGVARVKSQSGVMTAETGTYRWMSPEVIEHKPYDHKADVFSFGVVLWELLTGKIPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLDRSWQQDPALRPDFPEIIEILQQLAKEVGDEGEERRRDKPGGGFLSVLRRD* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0255 573 MobiDBLite consensus disorder prediction 1 17 - -
Lan20g0255 573 MobiDBLite consensus disorder prediction 108 148 - -
Lan20g0255 573 SUPERFAMILY ACT-like 179 243 IPR045865 -
Lan20g0255 573 Pfam Protein tyrosine and serine/threonine kinase 294 543 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Lan20g0255 573 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 13 557 - -
Lan20g0255 573 SUPERFAMILY Protein kinase-like (PK-like) 279 543 IPR011009 -
Lan20g0255 573 Gene3D Phosphorylase Kinase; domain 1 283 372 - -
Lan20g0255 573 Gene3D Transferase(Phosphotransferase) domain 1 373 561 - -
Lan20g0255 573 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 557 - -
Lan20g0255 573 MobiDBLite consensus disorder prediction 1 26 - -
Lan20g0255 573 PRINTS Tyrosine kinase catalytic domain signature 368 381 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 PRINTS Tyrosine kinase catalytic domain signature 405 423 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 PRINTS Tyrosine kinase catalytic domain signature 451 461 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 PRINTS Tyrosine kinase catalytic domain signature 470 492 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 PRINTS Tyrosine kinase catalytic domain signature 514 536 IPR001245 GO:0004672|GO:0006468
Lan20g0255 573 SMART serkin_6 294 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0255 573 ProSiteProfiles Protein kinase domain profile. 294 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0255 573 MobiDBLite consensus disorder prediction 549 573 - -
Lan20g0255 573 ProSiteProfiles ACT domain profile. 181 256 IPR002912 -
Lan20g0255 573 MobiDBLite consensus disorder prediction 108 135 - -
Lan20g0255 573 CDD STKc_MAP3K-like 300 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0255 Lan-Chr20 1739936 1747225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0255 17 566 MAP Kinase Kinase Kinase AT4G35780 65.636 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan20g0255 PK_Tyr_Ser-Thr 9.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0255 - - gmx:100805180 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0629 8 8554645 8561503 Lan20g0255 20 1739936 1747225 LSH
Lan20g0255 20 1739936 1747225 Lan4g1630 4 25201960 25208998 LSH