Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0238 ATGGCGGCATCATCTTCATCAGCATCGCTCTTTGGATTTAGAGAAGAAGACCAGAATCAGAATCAGTTGAATCAACAACAACATTCATCTTCAGCAACTCCAGCTGCGCTACCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAGTCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTACCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGCCCTGAGCCCACTTGCGTCCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAGCATGGTGAGAAGAAATGGAAGTGTGAAAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCATTAGCTCAAGAGAGTGCAAGACAGCCACCAAATCTGATAAGCAATGCCAATATTGGCAGCACCAGCCACCTTTATGGAACTAATAATAGCAACATGGCCTTAGCTTTTTCTCATGTGGCTACTCAAATGTCTAACATGCAAGACCAAATCAATAACAACCATTCTACTGACATGTTAGGCCTTGGTGGTAATCCAGGTCGGACCGGACAATTCGACCATATTCTTCACCCATCCTTACAGGCCGGTTCATCATCCTTTAAGCCTTCACAGCAAACTATGCATCACTCTCCAGCTTCATTCTTCATGTCTTCTGATAACTTGAACCAAAACTACCACCACCCTGACCAGTCTCAACAACAACAACAACAACAAGGGTTGGTGCAACAGAACAAAGTTCCATTCCAGGGACTCATGCATTTGTCTCATGATGGTCTTAACAATCATCACAACAATTCTCCATCACCTGGTGGATCAGCAAACCTGTTTAGCCATCCCTTCCTTTCAAGTAACAACAGTACTAATAGCAGCAACAACTCTTTCTCAGAACACTTCAACAATGCCAATGGAAGTGTTATGGGAGGCAATGAAGCAACCAACTTCTTCACTACAAGTAATGCTATAATGGGTGGTGGTCATCATCAACAAACAATAACTTCAAGTGCACCATCTCTATTCAGCACATCTCTCCAAAGCAACACTAGTGCTGCCAATACTCATCACATGTCTGCAACTGCACTGCTTCAGAAAGTTGCTCAAATGAGTGCAATTTCAAGCAACAACACCACCTCACTTCTAAAAAGCTTCGGAAGCAGCACTTCCTCTAGCAGCGGATCCAAAACTGAACAGCATAGACCAATCCATGTTCCTGCTCTTCCTCCTGCTACAAACTATAGCAGCATCTTCGGTGGAAATGAAAACAGCAATAATAATCTGCAAGACCTGATGAACTCTTTTGCAGCTAGTGGAAACTCCTCTATTTTTGAACATAGTAGTTCAGTAGGGTTTACTGGGTTTGAACCTTATGATCATAACTCAAACAGAAGTAGGGAACAACCAAAGCTGCATGGAGTGAAAATTGGAACAGGCTCAGATGATAGGCTTACTCGTGATTTTCTTGGTGTTGGTGCAACAGTGAGAAGCATAAGTGGTGGAAATGGAGGGATTGTTTCACAAAGGGAGCAACATGGACATGGTGGTGGCTTCAACTTAAGCAATACTTTGGAGGCAGAAACGAATAATGATGCTGTGCCGTCAAGACAAGCTTTTGGAGGGAATTTTTTCAGTGAGTAA 1875 0.4363 MAASSSSASLFGFREEDQNQNQLNQQQHSSSATPAALPQKKKRNQPGTPSPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLISNANIGSTSHLYGTNNSNMALAFSHVATQMSNMQDQINNNHSTDMLGLGGNPGRTGQFDHILHPSLQAGSSSFKPSQQTMHHSPASFFMSSDNLNQNYHHPDQSQQQQQQQGLVQQNKVPFQGLMHLSHDGLNNHHNNSPSPGGSANLFSHPFLSSNNSTNSSNNSFSEHFNNANGSVMGGNEATNFFTTSNAIMGGGHHQQTITSSAPSLFSTSLQSNTSAANTHHMSATALLQKVAQMSAISSNNTTSLLKSFGSSTSSSSGSKTEQHRPIHVPALPPATNYSSIFGGNENSNNNLQDLMNSFAASGNSSIFEHSSSVGFTGFEPYDHNSNRSREQPKLHGVKIGTGSDDRLTRDFLGVGATVRSISGGNGGIVSQREQHGHGGGFNLSNTLEAETNNDAVPSRQAFGGNFFSE* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0238 624 MobiDBLite consensus disorder prediction 275 322 - -
Lan20g0238 624 Gene3D Classic Zinc Finger 123 202 - -
Lan20g0238 624 MobiDBLite consensus disorder prediction 461 499 - -
Lan20g0238 624 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Lan20g0238 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Lan20g0238 624 MobiDBLite consensus disorder prediction 461 477 - -
Lan20g0238 624 SMART c2h2final6 69 91 IPR013087 -
Lan20g0238 624 SMART c2h2final6 145 165 IPR013087 -
Lan20g0238 624 SMART c2h2final6 110 140 IPR013087 -
Lan20g0238 624 Gene3D Classic Zinc Finger 50 116 - -
Lan20g0238 624 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lan20g0238 624 MobiDBLite consensus disorder prediction 1 46 - -
Lan20g0238 624 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 579 - -
Lan20g0238 624 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Lan20g0238 624 MobiDBLite consensus disorder prediction 341 360 - -
Lan20g0238 624 MobiDBLite consensus disorder prediction 1 54 - -
Lan20g0238 624 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0238 Lan-Chr20 1591019 1597238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0238 39 581 IDZ Gene Family AT2G02070 47.849 5.83e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0238 zf-C2H2_jaz 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0238 K25870 - gmx:100799389 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0647 8 8704770 8711113 Lan20g0238 20 1591019 1597238 LSH
Lan20g0238 20 1591019 1597238 Lan4g1652 4 25396371 25402690 LSH