Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0232 ATGAGTAGACGTTCCAGCAAAACTATCTACGTGGGGAATCTACCCGGTGATATTCGTGAAAGAGAAGTCGAAGATCTGTTTATTAAGTATGGGCACATAGCTCACATTGACCTGAAGGTTCCACCAAGGCCCCCTGGTTACGCATTTGTGGAGTTTGAAGATTCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGATTACGGGTAGAGCTTGCACATGGTGGGCGTGGTAATTCATCTTCAAGAGGAGGAGACCGATATAATAGTCGCAGCAATGGTCGAGGTGAAGGTGGACGTGGTGGTGGGATATCTAAGCGCTCTGATTTCCGTGTTCTTGTCACAGGGTTGCCCTCTTCAGCTTCATGGCAGGATCTTAAAGATCACATGCGAAAGGCAGGGGATGTTTGCTTCTCCCAAGTTTTTCGTGATGGAAGAGGTACAACTGGTATTGTGGATTACACCAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTAAGAATGCATTTTCCAGGGGTTATGTTCATGTGAGAGAATATGACTCAAGGAAGGACTCTAGAAGTCCTAGTCGTGATCGATCTTATTCCAGAGGAAGAAGCTATAGTCGCAGTCGTAGCCGTAGTTACAGTCCGGGTCACAGCCGAAGTAAATCTCCAAAGGGCAAATCTTCACGCAGTAAATCCCCAAAGGGCAAATCTTCACGAAGTAAATCCCCAAAGGGCAAATCTTCGCGCCGTTCACCAGCTAAATCTCCTTCACGGTCTGCTTCTCGTTCTCGGTCAAGATCAAGGTCCCGCTCTTTATCAGGATCGCGATCCAGATCAAGGTCTCCTTTGCCTTTGCGTAACAAGAGTCCAAAAAGACACAGTGCTAGCAGAAGCCCAAGTAAGAGCTCGAAAAGACGCAGTGCTAGTAGAAGCCCAAGTGCGAGCCCAAAAAGGCGCAGTGCTAGCAGAAGCCCAAGTAAGGGTGAGGTCTGA 1020 0.4735 MSRRSSKTIYVGNLPGDIREREVEDLFIKYGHIAHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSRGGDRYNSRSNGRGEGGRGGGISKRSDFRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDGRGTTGIVDYTNYDDMKYAIKKLDDSEFKNAFSRGYVHVREYDSRKDSRSPSRDRSYSRGRSYSRSRSRSYSPGHSRSKSPKGKSSRSKSPKGKSSRSKSPKGKSSRRSPAKSPSRSASRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKRHSASRSPSKSSKRRSASRSPSASPKRRSASRSPSKGEV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0232 339 MobiDBLite consensus disorder prediction 294 313 - -
Lan20g0232 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lan20g0232 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Lan20g0232 339 CDD RRM2_SF2_plant_like 117 192 - -
Lan20g0232 339 Gene3D - 117 193 IPR012677 -
Lan20g0232 339 CDD RRM1_SF2_plant_like 8 79 - -
Lan20g0232 339 MobiDBLite consensus disorder prediction 193 339 - -
Lan20g0232 339 MobiDBLite consensus disorder prediction 214 230 - -
Lan20g0232 339 MobiDBLite consensus disorder prediction 79 112 - -
Lan20g0232 339 MobiDBLite consensus disorder prediction 314 330 - -
Lan20g0232 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lan20g0232 339 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 288 - -
Lan20g0232 339 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lan20g0232 339 SMART rrm1_1 118 189 IPR000504 GO:0003723
Lan20g0232 339 MobiDBLite consensus disorder prediction 231 257 - -
Lan20g0232 339 PANTHER OS07G0673500 PROTEIN 2 288 - -
Lan20g0232 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Lan20g0232 339 MobiDBLite consensus disorder prediction 193 212 - -
Lan20g0232 339 SUPERFAMILY RNA-binding domain, RBD 5 182 IPR035979 GO:0003676
Lan20g0232 339 Gene3D - 2 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0232 Lan-Chr20 1558607 1563183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0232 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 1.71e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0232 K12890 - gmx:100789847 315.849