Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0226 ATGGGTGATAATAAAGGCAAAGTCTCAAACATAGAATGCTTTAAGTACAATTTCACAGATGCAACAGCAAGTGAAACTTCTGCTCATCGATCTCAAGATGGAGGGGTCATTAAAGATCAAGATCGATTGCTTCCAATAGCTAATGTTGGGAGGATCATGAAGCAAACCTTGCCTCCTAATGCCAAAGTTTCCAAAGAAGGTAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTTACAGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTGAATGGAGATGATATTTGCTGGGCTTTGGCTACCCTAGGGTTTGATGATTATGCTGAGCCACTCAGAAGGTATTTGCATAAGTTTAGGGAATTGGAAGGTGAGAAAGCTAATATATCAAAAGACTAA 420 0.4048 MGDNKGKVSNIECFKYNFTDATASETSAHRSQDGGVIKDQDRLLPIANVGRIMKQTLPPNAKVSKEGKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLHKFRELEGEKANISKD* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0226 139 Gene3D Histone, subunit A 34 139 IPR009072 GO:0046982
Lan20g0226 139 SUPERFAMILY Histone-fold 40 137 IPR009072 GO:0046982
Lan20g0226 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan20g0226 139 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan20g0226 139 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lan20g0226 139 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lan20g0226 139 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Lan20g0226 139 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 19 136 - -
Lan20g0226 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0226 Lan-Chr20 1515908 1516818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0226 16 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.923 8.88e-62 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan20g0226 CBFD_NFYB_HMF 2.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0226 K08065 - gmx:100796514 218.009