Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0209 ATGAAGGAAAAGGTGGATTCTCCTATCACTGTGCTTGAGGACTATTTTAGGAGTTCAGATTCAGAAACAAGTTCTTCTAAAGATCCTACAATGTATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTAAGTGGCATGCATTTTTTCAATTGATGAGGAACAAATCAAAGAAACCTGTACCCATATTGCATCCCCTCAATGGCCTCAAACTTTCAAAAAGATTGAGTAGAAGCATGAGGGAAAACATATTGCCTAGTTGTCTCTTAGATACAACTTTATCATCCCCTTGTAAGTCACCATGGAAGATCTTCACAAATCATGATATATTACTTGCAACTAATCATTTTAGCCAAGAAAATTTGATTGGAAAGGGTGGCTATGCTGAAGTTTACAAAGGGTGTTTACCAAATCATCAAGTAGTAGCAATTAAACGATTAACAAGAGGATCAGCTGATGAAAAGATAGGTGATTTCTTATCAGAACTTGGTGTAATGGCACATGTTAATCATCCTAATACTGCTAAGCTTGTTGGGTATGGTGTGGATGGTGGAATGCATCTAGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTACTTTATGGTTCTAAGGAGAAACTACCTTGGTTTATTAGGCAAAAAATTGCATTAGGAACAGCTAAGGGGATATTATATCTTCATGAAGGTTGTCAAAGAAGAATAATCCACAGAGATATTAAAGCTGCAAATATATTACTCACAGAGGACTATGAGCCTCAGATTATTGGGCAGATTTGTGATTTTGGGCTAGCAAAATGGTTGCCAGAGAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCACCTGAATACTTGCTTCATGGTATAGTTGATGAGAAAACAGATGTATTTGCCTTTGGTGTACTTCTATTAGAATTAGTCAGTGGAAGGCGAGCACTTGATTATTCACAACAAAGTCTTGTTTTATGGGCTAAACCATTGTTGAAAAAGAATGATATTAAGGAACTTATTGATCCTTCTATAGCAGATGAATTTGACTCTAGACAAATGAATCTTATGCTACTAGCAGCTTCTTTATGCATACAACAATCATCAATTCGTAGACCCTCTATGAGACAGGTTGTACAACTTTTGAATGGTAACCTTAGCTACTTTAAGGGTATGAAGAAATCTCGACTACCATTTTTCCGAAAAGTATTCCAAGAAGAACTACTTCATGGTGAAATTCTTTAA 1254 0.3636 MKEKVDSPITVLEDYFRSSDSETSSSKDPTMYSESQDISKPASKWHAFFQLMRNKSKKPVPILHPLNGLKLSKRLSRSMRENILPSCLLDTTLSSPCKSPWKIFTNHDILLATNHFSQENLIGKGGYAEVYKGCLPNHQVVAIKRLTRGSADEKIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASVLYGSKEKLPWFIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQIIGQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIKELIDPSIADEFDSRQMNLMLLAASLCIQQSSIRRPSMRQVVQLLNGNLSYFKGMKKSRLPFFRKVFQEELLHGEIL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0209 417 ProSiteProfiles Protein kinase domain profile. 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0209 417 MobiDBLite consensus disorder prediction 16 38 - -
Lan20g0209 417 PANTHER OS08G0249100 PROTEIN 1 413 - -
Lan20g0209 417 Gene3D Transferase(Phosphotransferase) domain 1 193 398 - -
Lan20g0209 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Lan20g0209 417 SMART serkin_6 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0209 417 Gene3D Phosphorylase Kinase; domain 1 88 190 - -
Lan20g0209 417 SUPERFAMILY Protein kinase-like (PK-like) 93 385 IPR011009 -
Lan20g0209 417 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 413 - -
Lan20g0209 417 Pfam Protein kinase domain 117 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0209 417 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0209 Lan-Chr20 1401995 1404921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0209 104 387 Receptor kinase-like Gene Family AT1G53420 40.753 1.15e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan20g0209 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0209 - - lang:109353423 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0667 8 8856710 8860355 Lan20g0209 20 1401995 1404921 LSH