Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0208 ATGACCCTTTTCTTCATCTTCTATCTCTTCCTTTTCACTCTCCCTATTCCTTCCCTCTCTTTAAACGCCACATGTCCTCTCAACTTCACCATCCTCACCACCCTCAGCGGCGGCGCTAGGCCTTCCTCCTTCGACTCAACCACTCGCTGCCAGTTCATCCGTCAAGCCTTCCGCCTTGTCCAATCTGACTACCTCCGCCGCACCACCTTCTTCCTACCACCCATCAACTCCTCACAATCATGCTGGCAAAGTTTCCAATCTTACATCAACTCCTTCGACTCCACTTTCAATATTCAATCCTCTTGTGGCTTTCAAACCAATTATATCTCTCAAGGTTGCATTAACATCACTACAAAACATGATTTTGAAGCCTTGGTTAGTGACTCTGTGCTTCAAGATGTTAATACAAATTGTAACCAATCACTTGAGAATAATTCACCTTGTGCTATTTGCACCACTAGTGTGTCTAATTTACCAACTTCTGGTCCTTCCATTGGGAATCTCTCTGATTGCACTGCTTATCCTTCTATTTATGTTGCTGCTTTCTCTAATCATTTTGGACCTTCTGACCCTGGAACTGCTAAGTGTTTGTTCTCCCTTGATTTTTCCTCTGAGGGTTCCTCTGGTGGTAAGAAAAAGGTTGTTATTGTTGTTGTTTCTGTTGTTTGTGTGTTTGTTTTGTTTTTCATGATTGTTGGGTTTTGGGGTTATTGGAAATTGAAAAGGGTGAGTAGGGGTAATGGTGGAAATATTACTGAGATGAATTTGGTTTCTGGGTTGGATTCAATGGACCAGAGCACCACTTTGATTAGGTTCACTATTGATGATGTTAAGAAGGCAACTAAGAATTTTCATAGGGATAATATCATTGGGAGAGGGGGTTATGGGAATGTGTATAGAGGGGTTATTTCTGATGGGAGTGAGGTTGCATTGAAGAGGTTCAAGAATTGTTCGGCTGCGGGTGATGAAAGCTTCACTCATGAAGTTGAGGTCATTGCGAGTATCAGGCATGTGAATCTTGTTGCTTTGAGAGGTTATTGTTCTGCAACAACTAAATATGAAGGTTACCAGAGGATTATTGTTACTGATTTGATGAAAAATGGGAGCCTTCATGATCATTTGTTTGGTTCTATGGGGATCAAAATCAGTTGGCCAATTCGTCAACAAATCGCGCTTGGTACCGCGAGGGGATTAGCTTATTTACATTATGGAGCTCAGCCTTCCATCATTCATAGGGATATTAAAGCGAGTAATATACTCTTGGATGACAAGTTTGAAGCTAAGGTTGCGGATTTTGGATTAGCAAAGTTCAACCCTGAGGGAATGACTCACATGAGCACAAGGGTTGCTGGAACAATGGGGTATGTAGCTCCTGAGTATGCATTGTATGGGCAATTGACCGAGAGAAGCGATGTTTTTAGTTTCGGTGTTGTGCTTCTTGAGCTTTTGAGTGGAAGGAAGGCTCTTCAAACAAACAATGATGGCCAACCCTCTGCATTGACTGATTGGGCTTGGTCATTGGTTAGAACAGGTAGAGCTTTGGATGTGATTGAAGATGGCATGCCAGAACCTAGTTCACAACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTACTTTGTTCTCATCCACAGTTATATGTTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAAACAGATGATGAATCAGTGCTTTCGATACCGGAACGGCAAATCCCTTTTGTTGCTGGGAGGCTTGATATTGAGAGAACTGTGAGCATGAGTGGCTCTGGTCAGCTCTCTAGTCCAACCGGTTATCAACCATATACTTTGGAAAGTGACCCCCATTCTTCTAATTCTAAGGAAGAAGGAAGCTCAAGCCCAAGGATTTTGTGTACAGATTGA 1887 0.4234 MTLFFIFYLFLFTLPIPSLSLNATCPLNFTILTTLSGGARPSSFDSTTRCQFIRQAFRLVQSDYLRRTTFFLPPINSSQSCWQSFQSYINSFDSTFNIQSSCGFQTNYISQGCINITTKHDFEALVSDSVLQDVNTNCNQSLENNSPCAICTTSVSNLPTSGPSIGNLSDCTAYPSIYVAAFSNHFGPSDPGTAKCLFSLDFSSEGSSGGKKKVVIVVVSVVCVFVLFFMIVGFWGYWKLKRVSRGNGGNITEMNLVSGLDSMDQSTTLIRFTIDDVKKATKNFHRDNIIGRGGYGNVYRGVISDGSEVALKRFKNCSAAGDESFTHEVEVIASIRHVNLVALRGYCSATTKYEGYQRIIVTDLMKNGSLHDHLFGSMGIKISWPIRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNNDGQPSALTDWAWSLVRTGRALDVIEDGMPEPSSQQVLEKYVLIAVLCSHPQLYVRPTMDQVVKMMETDDESVLSIPERQIPFVAGRLDIERTVSMSGSGQLSSPTGYQPYTLESDPHSSNSKEEGSSSPRILCTD* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0208 628 Gene3D Phosphorylase Kinase; domain 1 251 363 - -
Lan20g0208 628 MobiDBLite consensus disorder prediction 587 628 - -
Lan20g0208 628 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Lan20g0208 628 Gene3D Transferase(Phosphotransferase) domain 1 365 570 - -
Lan20g0208 628 SMART serkin_6 284 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0208 628 PANTHER OS01G0253100 PROTEIN 16 613 IPR045271 GO:0004714|GO:0006468
Lan20g0208 628 CDD STKc_IRAK 290 559 - -
Lan20g0208 628 SUPERFAMILY Protein kinase-like (PK-like) 266 570 IPR011009 -
Lan20g0208 628 Pfam Protein kinase domain 284 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0208 628 Pfam SPARK 22 159 IPR043891 -
Lan20g0208 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Lan20g0208 628 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 16 613 - -
Lan20g0208 628 ProSiteProfiles Protein kinase domain profile. 284 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0208 Lan-Chr20 1396688 1398817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0208 3 614 Receptor kinase-like Gene Family AT2G48010 60.616 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lan20g0208 Pkinase 9.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0208 - - gmx:100800760 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0668 8 8867953 8869897 Lan20g0208 20 1396688 1398817 LSH
Lan20g0208 20 1396688 1398817 Lan4g1686 4 25634466 25636535 LSH