Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0188 ATGAGGGAGGGTTTGAGATCTCGTGCTCGGTTAGGGAATGATTCCGGTGCTGGAGGAGTTGTTGAAAGGGGCGGAGTGGAAAAGAAGAGTTTTGATTTCAATGTTGAGGGTTCTCCTCTGCCACAACAAGAGGAGGGGTTGAACTTAACGACTGAGAAGGAGGAGGAGGTTGGATGTGCGGTGAAAAAAGAATGTGGTTTTGATTTGAACGAAAGTCCGAGTGGGAATGCTGATTTAGCTAATGATGCTGAGAAGGGTTGTAGTAGTGGTAGAGGTGGGAGCAGCGTTAGAGAAGCTGATGCTGAGTCAGAGGTGAGTAAAAAAGAAGTGAGTGATAAGGGTTGTTGTAGTGGCGGGGGTAGCAGCGATAAAGAAGATGTTGAGACATGCAAGAGTAAAAAAGGAGTTTCAAATGATAGTGTGTTGGTTGGTGGTCGAGTATTGCGCTCTAGGTCAAAGAGGGGAGACGATACGGAATCTTGTAATGGAGATAACAGCAGTGCCCTTCCTGGGAAAAGTAATAAAAGTGGTCGACCTGAGAAGATAGAAGTTAAGAAGGAATATGGTGAAGCTGATGAAATTGTTAGTGACTGTCATGACAATGAAAAGGTTAGGCAGAAACAGAAAGGGGGCGAGAGTAATTTGAAAAGGAAGCGTGGTAGGCCTCCCAAAATAGAGCCGAGAGATGAAGATCAATTTGTTGTTCAGTTGTCGCCACGTAAGCGTGGGAGACCTCCCATAATAAGGCCGAATGAGCAAGGCCAAGCAGGTGATCAATTGATACGTAAGCGTGGGAGACCACCCATAATAAGGCCAAATGAGCAAGGCCAATCAGGTGATCAATTTATACGTAAGCGTGGAAGACCTCCCAAAGCTGGCCTACAAGACCACCTCCCAGAAATGGCACATAATAGAAAAGGAAAGGTGGGCTTTCAAAATGGTAAAAAAGGTTTAACTGCCAAAGATAGTGCAAATGTGAATGCAGTTCCTGATATGCACTCAGGGAGAGCTGCTGAGAAAGATTTAGAAAAGAATAGATTTTCTGCAGTCAAGAATAATAAATTTGTGAAGGTTTTGAAAACTGAAAACAATGGAATAGCCTCACCGGTGACATCAAATACAGTGAAACCACCTGTTGGTGATAAAAGTGTAAGTAACAAAGATAGACAGCTGGTGAGGGAACAAATAATGGAGCGTCTCTCAGCTGCAGGCTGGACAGTTGATTATCGACAAAGGAATGGAAGAGAGTATCGTGATGCAGTGTATGTTAGTCTTGATGGAAAGACACACTGGTCAATCACCTTGGCTTACAATAGACTTAAGAACCATTATGAAGCTGGTGATGGTGAAGGTAAGGTATATGGACCAGGTTTCAAATTTACTCCAATACCAGAAGAGGATTACAAAATATTGACTAAGGTAATCAGCAAGGAAAGAATTGATAAAAATAAACCAAGGCCAAAGGGGGGAAAGAGTGGAAAGACAGTTGATGGAGTCAATAGAAAAGTGAAAAAAGAGAAACTGGGTTCTGGTGCAGGCAAGGGAAAAATTAAAAGGAAACGGCCACCTCATGAAGCAGGCAATGCGACATCAAGCAGAATGTCAGTCATGGTCAGGGATCATAAGCGACACAAAATGCAAAACAAGAAGCGATGTGCTCCATTGGTTCGCAATGCAGAGGAGGAGATAGATTCAGAAACTGATGGCTATGTACCTTACAATGGAAAGCGAACTGTGCTTGCCTGGATGATCGATTTGGGAACGATTGTGCAAAACCAGAAGGTTCATTATATGCATAATAGAAGGGAGCTTGTGCCAATGGAGGGTAGGATAACAGGAGATGGCATTCGTTGTGGTTGCTGTAATGAAATAGTAACAATTTCAGACTTTGAAGCTCATGCAGGAAGCAAACTTTCTGAACCACTTAAAAATATATATACGGAGGGAGGAACTTCTCTCTTACAATGCTTGCTAGATTCATGGTTTAAACAAGATGAGTTTGAACGTAAAGGTTTTCATTTTGTTGATACCGTGGGTGAAGATCCAAATGACGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCACCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTCGCTGGAGAAAGTTCAAACCAAAGGGACAGCAACAATGATTTTACTTTGTCTACATTACTGACATGCCATTCATGCCAGGAAAAATATCATAGATCTTGCATTGAGGCAAATGGTGCCAATACTGATGATTCCAGAGATCCCATTTTTTGTGGAAACAAATGTGATCAATTATCTGAGAATCTCAAAATGCTTCTTGGGGTTAAACATGAAATTGGAGATGGACTTTCTTGGTCTTTTATTCGACGGTCAGATGTTGGTTTTGACGCTTCTGAGATAAAACATGAGATGGTTGAATGTAATTCCAAGCTGGCTGTTACATTAACAATTATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACAAATCTGATCCACAGTATTCTATATAATTGTGGATCAAACTTCAAACGACTGAACTACAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAAGTCATCTCTGCAGCAACTATAAGGATCCATGGGAACAAACTAGCAGAGATGCCATTTATTGGGACCCGTTACATGTATAGGCGACAAGGAATGTGCCGCCGACTTCTAAATGCGATTGAATGTGCACTCAGCTCTTTAAATGTTGATTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACATGGACGTCTGTTTTTGGGTTTGAGCCACTTGACTTGACAAGCAAGAATTTAATAAATAACATGAATCTTGTGGTATTCCCTCATGTAGATATGTTACAGAAAAAGATACCCAAGCATAAAGTAGCTGGTGAGAATTTGATTCCAATAGAAGTTTCTAATCTTCAGGAGAGTCATACAATACACGAGGTAGCAAATAGATGTGATGGGGTGGGCTCATCTGGATCTGACTTGATCAGTTCTGCTGGGATCCCTCCCTCTAATGCATGTCAGATAAATGAATCTTATTTTCAGCCTCCTAAGGGATCATTGAATGACGCACCTGTCATCACTAGCAACACTATACATCATAATAAATCTCCAGATGTCACATGTCAATTTGTATGTCAGGCTGTTGATGAAAATATGGCGGTGGAAGCTGCAAATGTCCGTGATTGTGCCAGATTGGACCATGATCAGAAGTTAATAGATTTGGATAGCCAGTTGAACAAATGCTGTGTTACTTACGAGGAAAAGCAATGTCTTGGTTTGTCCCATATTAGCACTGAAGCTGCTGAAGGACATGAACTGAAAAGCAAAACTGACTGTGTTCAGCCATACTTCAAAGGATCAGATGTACAAGCTGAAGCTGTTAATGGTTGTGCTGCTTATTGTAGACCCGACACCAACAGTGATTGCGCCGCTGGTGAAGCAGTTCTCACAACAAATGTAAAAAATAACATTACTGAAGATTTGCTTGTGGCTAATTGTGAAAAAGGTTCCAGTATGGTTAGTGTGCTGAATGGGAATGAAGCAGAAATATGTTCAGTCAAAGCACCCAATCCTGGAGTTTGCCAATCCATAGTGGCATCTTCAGGTTTTCGTGAGAACACTGCTGATGGTGTCAATGAGAGAAGTGAAGCACCAAGTGTAGTTGAGGTCAATTTCCTTCCTGCTGATAAAGGCATATTTGTGGATACTAAACCTGACATTGCAGGGTCTTCAGAGTTAGCTGAGCCTGATCTGCAGCTCGATCAAACTACACGGAGTAACCCTCCATCATTGTGTACCCCAAACACTGCTGGCGTGAGTCCTCGTTGGGCATCGTCTGGCAGTACTTCATGTGCTAGTACTGAGAATATAGTTCTGTCAAACCAAGCCAGTTGA 3996 0.4204 MREGLRSRARLGNDSGAGGVVERGGVEKKSFDFNVEGSPLPQQEEGLNLTTEKEEEVGCAVKKECGFDLNESPSGNADLANDAEKGCSSGRGGSSVREADAESEVSKKEVSDKGCCSGGGSSDKEDVETCKSKKGVSNDSVLVGGRVLRSRSKRGDDTESCNGDNSSALPGKSNKSGRPEKIEVKKEYGEADEIVSDCHDNEKVRQKQKGGESNLKRKRGRPPKIEPRDEDQFVVQLSPRKRGRPPIIRPNEQGQAGDQLIRKRGRPPIIRPNEQGQSGDQFIRKRGRPPKAGLQDHLPEMAHNRKGKVGFQNGKKGLTAKDSANVNAVPDMHSGRAAEKDLEKNRFSAVKNNKFVKVLKTENNGIASPVTSNTVKPPVGDKSVSNKDRQLVREQIMERLSAAGWTVDYRQRNGREYRDAVYVSLDGKTHWSITLAYNRLKNHYEAGDGEGKVYGPGFKFTPIPEEDYKILTKVISKERIDKNKPRPKGGKSGKTVDGVNRKVKKEKLGSGAGKGKIKRKRPPHEAGNATSSRMSVMVRDHKRHKMQNKKRCAPLVRNAEEEIDSETDGYVPYNGKRTVLAWMIDLGTIVQNQKVHYMHNRRELVPMEGRITGDGIRCGCCNEIVTISDFEAHAGSKLSEPLKNIYTEGGTSLLQCLLDSWFKQDEFERKGFHFVDTVGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCIYCCCKFCGFAGESSNQRDSNNDFTLSTLLTCHSCQEKYHRSCIEANGANTDDSRDPIFCGNKCDQLSENLKMLLGVKHEIGDGLSWSFIRRSDVGFDASEIKHEMVECNSKLAVTLTIMDECFMPYIDHRSGTNLIHSILYNCGSNFKRLNYSGFVTAILERGDEVISAATIRIHGNKLAEMPFIGTRYMYRRQGMCRRLLNAIECALSSLNVDLLVIPAISELRETWTSVFGFEPLDLTSKNLINNMNLVVFPHVDMLQKKIPKHKVAGENLIPIEVSNLQESHTIHEVANRCDGVGSSGSDLISSAGIPPSNACQINESYFQPPKGSLNDAPVITSNTIHHNKSPDVTCQFVCQAVDENMAVEAANVRDCARLDHDQKLIDLDSQLNKCCVTYEEKQCLGLSHISTEAAEGHELKSKTDCVQPYFKGSDVQAEAVNGCAAYCRPDTNSDCAAGEAVLTTNVKNNITEDLLVANCEKGSSMVSVLNGNEAEICSVKAPNPGVCQSIVASSGFRENTADGVNERSEAPSVVEVNFLPADKGIFVDTKPDIAGSSELAEPDLQLDQTTRSNPPSLCTPNTAGVSPRWASSGSTSCASTENIVLSNQAS* 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0188 1331 MobiDBLite consensus disorder prediction 97 111 - -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 284 304 - -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 1283 1331 - -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 1 52 - -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 479 513 - -
Lan20g0188 1331 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 95 1139 - -
Lan20g0188 1331 PANTHER PHD FINGER PROTEIN 12 95 1139 IPR042163 GO:0003714|GO:0045892
Lan20g0188 1331 MobiDBLite consensus disorder prediction 176 237 - -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 1282 1331 - -
Lan20g0188 1331 Pfam Tify domain binding domain 609 658 IPR032308 -
Lan20g0188 1331 CDD PHD1_AIRE 687 726 - -
Lan20g0188 1331 SMART AT_hook_2 239 251 IPR017956 GO:0003677
Lan20g0188 1331 SMART AT_hook_2 283 295 IPR017956 GO:0003677
Lan20g0188 1331 SMART AT_hook_2 216 228 IPR017956 GO:0003677
Lan20g0188 1331 SMART AT_hook_2 261 273 IPR017956 GO:0003677
Lan20g0188 1331 MobiDBLite consensus disorder prediction 479 536 - -
Lan20g0188 1331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 750 IPR013083 -
Lan20g0188 1331 SUPERFAMILY FYVE/PHD zinc finger 680 731 IPR011011 -
Lan20g0188 1331 SMART PHD_3 686 727 IPR001965 -
Lan20g0188 1331 SMART PHD_3 728 788 IPR001965 -
Lan20g0188 1331 MobiDBLite consensus disorder prediction 69 318 - -
Lan20g0188 1331 ProSiteProfiles Zinc finger PHD-type profile. 684 729 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0188 Lan-Chr20 1238542 1246764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0188 151 993 PHD Transcription Factor Family AT5G36670 39.683 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0188 - - lang:109346644 1981.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0188 20 1238542 1246764 Lan4g1716 4 25844170 25853569 LSH