Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0180 ATGGGTAACACGGACTATGAGTACTCTTCGAGCATGAACGTAGAGAGCGTGCCATGCGTGGCCGTGCCACCACCACAGTCATTTTTGAAGTCTCTGAAGTACTCACTGAAGGAAACATTCTTCCCAGATGACCCTTTAAGAAGGTTCAAGAACCAACCAGCTTCTAAGAGGCTGGTGCTTGGGCTTCAGTACTTTTTTCCAATCTTTGAGTGGGCTCCTCAATACACTCTTAAGTTTTTCAAGTCTGATCTCATAGCTGGCATCACCATAGCTAGCTTGGCTATTCCTCAAGGAATCAGTTATGCCAAGCTCGCCAATCTCCCTCCAATTCTGGGACTGTATTCAAGCTTTATACCACCATTGATTTATGCAATGATGGGTAGCTCGAGGGACTTGGCAGTGGGTACTGTGGCGGTTGGATCCCTTTTGATGGGTTCCATGCTGAGTAGTGAGGTTAATCCAAACCAGAACCCAAAGCTCTTCCTCCACCTTGCTTTCACAGCTACTTTCTTTGCTGGAGTTTTGCAAGCTTCACTCGGTCTCTTTAGGTTAGGGTTTATAGTGGATTTCCTGTCACATGCAACCATAGTAGGGTTCATGGGAGGAGCAGCCACAGTGGTTTGCCTGCAACAACTGAAATCAATCTTAGGCCTTGACCACTTCACCCATGACGCCGATATCATCTCAGTTATGCGCTCTGTTTTTACCCAAACTCATCAGTGGAGGTGGGAAAGCGCTGTGTTAGGTGTTTGCTTCATTTTCTTTCTCCTTCTTACACGATTCTTCAGCAAAAGACAACCGAAGTTGTTTTGGGTGTCAGCAATGGCGCCGTTGACGTCAGTTATATTGGGAAGTGTACTGGTTTATTTCACCCACGCGGAGAACCACGGCGTTCAAGTGATAGGAGAATTGAAGAAAGGGTTAAATCCAACATCAATGACAGATTTGGTATTTGTGTCGCCTTATATGAGCACAGCAATCAAAACAGGCCTTATCGTTGGCATTATAGCACTTGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCAATGTTCAAAAATTACCATATTGATGGAAACAAAGAGATGATAGCTATTGGCACCATGAATATTGTTGGTTCTTTCACCTCATGCTACCTCACCACAGGGCCTTTTTCACGTTCTGCTGTGAACTACAATGCTGGATGCAAGACTGCAGCATCAAATATTGTAATGTCAATTGCAGTGATGGTGACATTGTTATGCTTAACACCTTTGTTCCATTACACTCCTCTAGTGGTTCTATCAGCCATAATTGTATCTGCAATGCTTGGCCTCATAGATTATGAAGCTGCCATCCATCTTTGGAAGATTGACAAATTTGACTTTGTGATTTGCATCAGTGCATATATTGGTGTGGTCTTTGGCAGTGTTGAAATTGGCTTAATCGTTGCAGTTGCATTATCTTTACTTAGGATACTTTTATTTATTGCAAGGCCAAGGACATTTGTTTTGGGAAACATTCCAAATTCTGTGATATACAGAAATGTTGAGCAATATCCAAATGCAAATCATGTTCCTGGAATTCTAATTCTAAAGATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGGATTACAAGGTGGATTGATGAAGAGGAAGACAGAATTAAAGCTACAGGGGAAACAAGTTTGCAATATGTTATAATGGATATGACTGCTGTTGGGAACATTGATACAAGTGGAATCAGCATGCTTGAAGAGGTCAAAAAGATTGCAGACAGAAGAGAGCTACAACTTGTTTTGGTCAATCCTGGAAGTGAGGTGATGAAGAAACTGAACAAATCCAAATTCCAAATGGATTTAGGGCAGAAGTGGTTCTATCTGACAGTTGCAGAGGCTGTTGGAGCATGCAACTATATGCTGCACGCATGCAAACCAAATTCTGTGAAAGATGAACAAGAGGGTTGGAACAATGTCTAA 1971 0.4231 MGNTDYEYSSSMNVESVPCVAVPPPQSFLKSLKYSLKETFFPDDPLRRFKNQPASKRLVLGLQYFFPIFEWAPQYTLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLSSEVNPNQNPKLFLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKSILGLDHFTHDADIISVMRSVFTQTHQWRWESAVLGVCFIFFLLLTRFFSKRQPKLFWVSAMAPLTSVILGSVLVYFTHAENHGVQVIGELKKGLNPTSMTDLVFVSPYMSTAIKTGLIVGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMSIAVMVTLLCLTPLFHYTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFVICISAYIGVVFGSVEIGLIVAVALSLLRILLFIARPRTFVLGNIPNSVIYRNVEQYPNANHVPGILILKIDAPIYFANASYLRERITRWIDEEEDRIKATGETSLQYVIMDMTAVGNIDTSGISMLEEVKKIADRRELQLVLVNPGSEVMKKLNKSKFQMDLGQKWFYLTVAEAVGACNYMLHACKPNSVKDEQEGWNNV* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0180 656 ProSiteProfiles STAS domain profile. 511 634 IPR002645 -
Lan20g0180 656 Pfam Sulfate permease family 80 460 IPR011547 GO:0016021
Lan20g0180 656 PANTHER SULFATE TRANSPORTER 2 654 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan20g0180 656 TIGRFAM sulP: sulfate permease 67 630 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan20g0180 656 Pfam STAS domain 512 630 IPR002645 -
Lan20g0180 656 SUPERFAMILY SpoIIaa-like 513 634 IPR036513 -
Lan20g0180 656 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 654 - -
Lan20g0180 656 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Lan20g0180 656 Gene3D STAS domain 491 636 IPR036513 -
Lan20g0180 656 CDD STAS_SulP_like_sulfate_transporter 512 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0180 Lan-Chr20 1171069 1185476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0180 10 656 Inorganic Solute Cotransporters AT4G02700 67.593 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0180 K17471 - gmx:100791091 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0531 9 8121593 8127312 Lan20g0180 20 1171069 1185476 PCT
Lan5g1263 5 26310086 26320578 Lan20g0180 20 1171069 1185476 PCT
Lan20g0180 20 1171069 1185476 Lan9g0531 9 8121593 8127312 PCT
Lan20g0180 20 1171069 1185476 Lan5g1263 5 26310086 26320578 PCT