Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0167 ATGGAGAATTCATTTGGATGCTATGAAACAAAGATGAATATGAAGGACACAGAGTTAAGGTTGGGGTTGCCAGGAACTGATGACATGGAGAAAAGTTCATGCAATTACTCTGTTGTTAGAAGCAACAACAAAAGATCTTCACCAGAAGCCAGTGATGAAGAAGAATCCATAAGCAAGAATGGTTCTAATACCATAAGTGATGATGACCAACACAATTATGCCCCACCTTCAAAGGCACAAGTAGTGGGATGGCCACCAATTAGATCATATAGGAAGAACAATATACAACAGAAGAAGGATGAGGAAGTTGATGGGGTTGGGATGTATGTAAAAGTGAGCATGACTGGTGCACCTTATTTGAGGAAGATAGATCTCATGGTTTATAAGAGCTACCTTGAACTCCTAAAGGCCTTGGAAAATATGTTGAAGTGCAGATTTGGTGAATATTCAGAAAGAGAAGGGTATAATGGATCTGAATATGTTCCAACTTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGCAAATGTTCATGTCCTCCTGCAAAAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTCAAAAAATAA 609 0.3924 MENSFGCYETKMNMKDTELRLGLPGTDDMEKSSCNYSVVRSNNKRSSPEASDEEESISKNGSNTISDDDQHNYAPPSKAQVVGWPPIRSYRKNNIQQKKDEEVDGVGMYVKVSMTGAPYLRKIDLMVYKSYLELLKALENMLKCRFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWQMFMSSCKRLRIMKGSEAKGFKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0167 202 MobiDBLite consensus disorder prediction 30 45 - -
Lan20g0167 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 200 IPR003311 GO:0005634|GO:0006355
Lan20g0167 202 PANTHER AUXIN-INDUCED PROTEIN 6 200 - -
Lan20g0167 202 SUPERFAMILY CAD & PB1 domains 105 193 - -
Lan20g0167 202 MobiDBLite consensus disorder prediction 57 73 - -
Lan20g0167 202 MobiDBLite consensus disorder prediction 20 81 - -
Lan20g0167 202 ProSiteProfiles PB1 domain profile. 107 194 IPR000270 GO:0005515
Lan20g0167 202 Pfam AUX/IAA family 17 200 IPR033389 -
Lan20g0167 202 Gene3D - 101 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0167 Lan-Chr20 1098700 1099780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0167 110 201 B3 DNA Binding Superfamily AT2G46530 36.957 1.37e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan20g0167 AUX_IAA 1.8e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0167 K14484 - gmx:100780752 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0167 20 1098700 1099780 Lan4g1739 4 26070735 26072059 LSH
Lan5g1260 5 26296364 26297570 Lan20g0167 20 1098700 1099780 PCT
Lan20g0167 20 1098700 1099780 Lan5g1260 5 26296364 26297570 PCT