Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0165 ATGGACGGGAAAAAAGTGGTGAAAGTAAGGAGGGAGTTGCTTGAACCTCCATTGACTTGTCCATATTGTCACAATTTGCTGAAGAACGCAACTTCAAATATCGAATGCGTCCATACATTTTGCAGGAGTTGCATAGAGGAAATTGTTACAGAAAAGGACATGACAGAATGTCCAGTTTGTGAAACGGATTGGGGTGCCAATCCCATTCAGAAAATGAGACACGACCATAGTTTGCAGTCACTGAGGGACAAACTTTTTCCTGAAAACAAAGCATTGAAGGCAACCGCAACTGATGTTGTTAGCAGTCAGAGCAGTGTTAACATTGAACATTCAGATGAGATGATGAGCCTCATTTCTTTGAGAACAACATATGAGGGTTATTCCTCTTCTGAAGATAGCCAAGGTGTTGAACCAAAGGATGAAATATTGGCTAATCTAAGAACATCAAGTTCTAGAAAGAGAGGCAAGAAGAAGAAGAATAAGCCACGCTTACCTCGCCAGAAAAAGGAACTTGCTGTAGGGGAATCAAGTCAATCCTCTTATGACCAACCAGTTCCACCTAGGACTATGCCCATAGAGAATGCATCGTCCGTTTGGCTCACCTTAGAACCTTCTGAAAACCGGGATGGAGTACTCTTGCCAGAAATTGGTGTACCTTATATCAGAATGAATGGAAAAATGCCGGTCTCACATGTCCATAAATTTGTGCAGAAGAAATTGGGTCTGGAAATTGAAAATGAGATTGAGATTACATGCTTGGGAGAAGTTGTGCCCCCAGAAATGGAGCTACTGGATTTGTATAAGACATGGATGGAGAGTGTATTCCCAGAAAAGGAAATTACAGTAACTGTTGGGTCCTCAGCAGAGAGATTTGTCATGACCCTATACTATGCCCTCAAGGTCTAA 906 0.4194 MDGKKVVKVRRELLEPPLTCPYCHNLLKNATSNIECVHTFCRSCIEEIVTEKDMTECPVCETDWGANPIQKMRHDHSLQSLRDKLFPENKALKATATDVVSSQSSVNIEHSDEMMSLISLRTTYEGYSSSEDSQGVEPKDEILANLRTSSSRKRGKKKKNKPRLPRQKKELAVGESSQSSYDQPVPPRTMPIENASSVWLTLEPSENRDGVLLPEIGVPYIRMNGKMPVSHVHKFVQKKLGLEIENEIEITCLGEVVPPEMELLDLYKTWMESVFPEKEITVTVGSSAERFVMTLYYALKV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0165 301 MobiDBLite consensus disorder prediction 127 189 - -
Lan20g0165 301 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lan20g0165 301 MobiDBLite consensus disorder prediction 150 165 - -
Lan20g0165 301 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Lan20g0165 301 Gene3D - 187 276 - -
Lan20g0165 301 SUPERFAMILY RING/U-box 12 74 - -
Lan20g0165 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Lan20g0165 301 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 102 298 IPR044807 GO:0004842
Lan20g0165 301 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 91 IPR044807 GO:0004842
Lan20g0165 301 SMART ring_2 20 60 IPR001841 -
Lan20g0165 301 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0165 Lan-Chr20 1077311 1082390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0165 1 151 C3H Transcription Factor Family AT2G30580 41.060 2.52e-28 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0512 9 7942286 7948855 Lan20g0165 20 1077311 1082390 PCT
Lan5g1255 5 26270850 26275074 Lan20g0165 20 1077311 1082390 PCT
Lan20g0165 20 1077311 1082390 Lan9g0512 9 7942286 7948855 PCT
Lan20g0165 20 1077311 1082390 Lan5g1255 5 26270850 26275074 PCT