Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0164 ATGGAGGAGGTTGAAGTAGCTAACAGAGCAGCTATTGAAAGCTGTCACAGAATTCTTAATATGTTGTCTCAGCCCAAGGATCAGATTCAACAAAGGACTTTAATGGTGGAAACTGGAGAAGCAGTGGGGAGGTTCAAGAAAGTTGTGTCTTTGCTCCACAATGGTTTGGGTCATGCTAGATTCAGGAAGCTTAAAAAACTTGTCCCCTTTTCCCAAAGTATCCTCTTAGATAACCCAAATTGCCAAATTAAAACCGTAAACCACTCTAAATATCTGCAGTTTCCCCAAATCCCAGCCAGCTTTCCTGAGAATTCAGTTCAGGAATATGGCTCAAGTGTTCGGGAAACTCTCTCTCTTGGAAACCAATCTTTGGAATTGAACTCAGGTGGTACAACTCCTCTTCGGCTTGCACAACAAGCTTCGTCGGCACATTATCACTTCCTTCAGCAGCAGCAGCAACAAAGGTTGATAGTGCAGCAGCAACAAATGAAACATCAAGCGGAAATGATGTACCGAAGGAATAATAACAGTGGCATAAACCTGAACTTTGACAGTAGTAGCTGCACACCAACAATGTCGTCTACCAGGTCTTTCATTTCTTCCTTGAGCATAGACGGAAGTGTACCGAACGTGGATGGAAGTGCCTTTCATTTAATTGGAGCTCCACCACACTCTTCAGATCAGAATTCACAACTGCATAAGAGAAAATGTTCTGCCGCAGGTGATGAGGGCAGTGTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTCGCAGATATTCCTCCCGATGACTTTTCCTGGCGGAAGTATGGGCAGAAACCTATCAAAGGCTCTCCTCACCCTAGGGGATACTATAAGTGCAGCAGCGTGAGAGGCTGCCCTGCTAGGAAACATGTTGAAAGGTGTTTGGAAGAGCCTACAATGTTGATTGTTACATATGAAGGGGAGCATAACCATCCTAAGCTAACGGAACAATCTGCAAATGCATGA 1050 0.4438 MEEVEVANRAAIESCHRILNMLSQPKDQIQQRTLMVETGEAVGRFKKVVSLLHNGLGHARFRKLKKLVPFSQSILLDNPNCQIKTVNHSKYLQFPQIPASFPENSVQEYGSSVRETLSLGNQSLELNSGGTTPLRLAQQASSAHYHFLQQQQQQRLIVQQQQMKHQAEMMYRRNNNSGINLNFDSSSCTPTMSSTRSFISSLSIDGSVPNVDGSAFHLIGAPPHSSDQNSQLHKRKCSAAGDEGSVKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLTEQSANA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0164 349 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 348 - -
Lan20g0164 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 348 IPR044810 GO:0003700
Lan20g0164 349 Pfam Plant zinc cluster domain 234 279 IPR018872 -
Lan20g0164 349 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0164 349 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0164 349 SMART WRKY_cls 281 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0164 349 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan20g0164 349 Gene3D WRKY domain 265 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0164 Lan-Chr20 1065770 1068350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0164 1 346 WRKY Transcription Factor Family AT2G30590 55.699 8.73e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan20g0164 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0164 - - gmx:100170681 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0705 8 9152392 9155166 Lan20g0164 20 1065770 1068350 LSH
Lan20g0164 20 1065770 1068350 Lan4g1747 4 26126081 26128725 LSH