Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0159 ATGGAAGGAAACTATGTGAACAAAAACACTCATAGAGAGGACCATAGCTATGGCTTTGAGGAGCATGCGCGGGGAACTTCATGGCCAGCCAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAGGTCAGCTCAAGCATTGGGTGGACATATGAATGTTCATAGAAGGGATAGAGCAAGATTGAGGTCTTCCTTATGTTCATGGGTTTCGGAGTGCCCTAAACCTAACCCTAACACCACAAAGCCTAATAACCCATCATCTCCTTTATCTGATGAGCTTTTGAATTGCACACATCGCACTCCACTTTATAGTCCTTATCTCACTTTGCCCTCTTCTACCAATGGAGATAAGAAACCAAGACTTGCATCATCTTCGCAGCAGCTTTCTCCTTTGAGTACTCAAAGCATGGAAATTAAGATGATGAGTAAATACACAACAATGAGTACTTTTAATGTTGAAGATTTGAAGGATTGTGAAGAGGAGGATGAAGGCAGGATTTTCAAGAATAGTAGTGAGCATAACCTTACGTTGGAGTTGGGAATAGGGTTGCTCAAACAAGAGGAGAAGTTAGATTTGGAACTTCGATTGGGGCATTAA 600 0.4183 MEGNYVNKNTHREDHSYGFEEHARGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLCSWVSECPKPNPNTTKPNNPSSPLSDELLNCTHRTPLYSPYLTLPSSTNGDKKPRLASSSQQLSPLSTQSMEIKMMSKYTTMSTFNVEDLKDCEEEDEGRIFKNSSEHNLTLELGIGLLKQEEKLDLELRLGH* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0159 199 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Lan20g0159 199 MobiDBLite consensus disorder prediction 73 93 - -
Lan20g0159 199 MobiDBLite consensus disorder prediction 108 134 - -
Lan20g0159 199 Pfam C2H2-type zinc finger 33 57 - -
Lan20g0159 199 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Lan20g0159 199 Gene3D Classic Zinc Finger 9 78 - -
Lan20g0159 199 SMART c2h2final6 33 55 IPR013087 -
Lan20g0159 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Lan20g0159 199 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 9 199 - -
Lan20g0159 199 PANTHER OS07G0101800 PROTEIN 9 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0159 Lan-Chr20 1033371 1033990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0159 4 198 C2H2 Transcription Factor Family AT3G23130 39.216 3.00e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0159 zf-C2H2_6 5.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0159 - - gmx:102660985 233.802