Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0156 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTACCTCTGGCACCTGAATTTCGTCCTACAGAAACCGAATTCTCAGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAATCTAGTACCTTTGGGATATGCAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTTTTTTCCAATTTGAATAGGTCACTATTGAAGTGCCCTGAATTGGGCCAAGTTAACAGTTCCTTAGGTGCTTGTAATTCTTTAAAAACGGGATATAGGGATAGTAGTAGTGATTGCGCGCCGCGAGCTGTGTTTACTACTAGGCAGCAAGAACTCGGGCAGAGTGTGAAAAAGGCCAAAGGGGCAGGTCAGAACCCAATATCATGTGTGCAAAAGCAAGTATGGCAAAGTGGGGAGGTTTATACACTGGAACAGTTTGAGTCTAAGTCAAAGACTTTTGCAAGGAGCATTCTAGGGACGGTGAAGGATGTTTCTCCACTGGATATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATATATATTGAGTATGCCAATGATGTGCCTGGCTCTGCTTTTGGAGAATCAAAGGGTGAATTTTGTTACAGTCCTACGAAACAGAGAAGAAAGACTTGTTATAAGAGTAGAGTAGATACCTCTGATTGTAAACAAACTGAACTGAATAGTGTAAGAGATGCCAAAAGTAATGAGACTATGGGTGCTTCTTCCGAGACTCACGCAGGCCCATGTTTAAAGATGTACGAATCAGCTATGCCCGTGTCAACATTTCCATTGAATGAAGCTTCACAATGTTCTAGTGAAAAAAGTTCTGAAGTCAGCAATGATATCCAAGGCAGATCTGGCTGGAAGCTTTCAAATAGCCCGTGGAACTTGCAGTCTATTGCACACTCATCTGGATCCTTAACGCGCTTCATGCCAGATAATATTCCTGGTGTTACTTCCCCCATGGTGTACATCGGTATGCTGTTCAGTTGGTTTGCCTGGCATGTGGAGGATCATGAGCTTCATAGCATGAATTTTCTTCACACTGGATCATCGAAGACTTGGTATTCTGTTCCCGGAGATTATGCCTTTGCTTTTGAGGAGGTCATCCGCTGTCAAGCTTATGGTGATAACATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACCACTCTTTTATCACCTGAGATAATTATTGCATCTGGCATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCAGAATGGCTTACAATAGCTAAGGAAGCTGCAGTGCGTAGAGCTGTGATGAATTATCTTCCCATGCTCTCTCACCAGCAACTGCTTTACTTGTTGACCATGTCTTTTATTCCAAGAGTGCCAAGAACACTATTGCCCGGTGCGCGCAGTTCACGTCTAAAAGATCGTCAAAAAGAAGAAAGGGAGTTGTTAGTAAAAAAAGCTTTTATAGAAGATATGCTGCAGGAAAACAAGTTGATATCCATCCTTCTTGGAAAGGAAGCAACCAAACAGGCTGTTTTATGGAATGCTGATTTACTACCAAATTTCAGTAAACATTGTCAGTTGTCGGATTTAGCTTCTACTACTAATAGCTCTGTAGCGGACATGTCCAATAGTTCTTCAGATAAAAGTAGCCATTATCTGTTTGACGAGACGAGTTTGTATATGGAGAATCAGACTGATTTATATCTTGGTGATGTCGACGACGATCTTTCACGTGACTTCCAAACTGATTCAGGACCCTTGGCTTGTGTGGGTTGTGGAGTACTTGGTTTTCCATTTATGACTGTGGTGCAACCATCTGAAAAATTGACAGTGGAACTTTTTCCTGTTGATCATCATCTAGTTCAAGATTCCTCTCCGAACTCTACTGCCTCCCTTCATAGCTCAGTCTCAACAAAGGAATCATCCAATCTATCATTGAAGGCATTTGATAAACACTGGAATGCCTCCAGTAAATTTTTGAGACCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGAATATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTAATAATTTGCCATTCAGACTACCAGAAAATGAAGGCACATGCCAGGGCAGTTGCAGAAGAGACACATAGTACTTTTGATTATAATGAGGTTCCCTTAGAAATTGCATCCCCAGAAAATTTGACTCTGATTGATTTGGCAATTGTTGCTGAACAACATGATGAATCTGAAGACTGGACATCTAAACTAGGCATTAACCTCCGGTATTGTGTCAACGCAAGACATAACTCTCCATCTAGACAAGTTCCCTGGACTCTAGATTTAGGGATGCTGTTCCCTGATAAACATTCTGATTTAGAATTTTTATCATTAAATTGGCAGTTACGGAGATCTCGGTCCAAAAGGTTGAATCATTCAGCTCAGACTAAAACCTGTGACAAAATTCAGCGAAATAAGGATTGTCAGTTGGAGGGAAGAAAAGATGGCTCCACTGTCAAAAAGATTGTAATTCATTATTCAAGAAGGAAGTTCAAATCAAAGCAAAGTTGTTCCTCGGGACTGAGCATGGTCCATACATTTCAAGAGAAGTCCACAAATGTGTCAGCTGTCTTAAGTGGGAAACACTATGATTGTGCTTCTAAATGTGAGTTTGACACCAGCAATTTCAGGAGTGAATGTGCATTGTCGGGTGTGTCTGCTTCTACTGCAATGTCTCCAACGCATCATGAAATGTCTACAAAGAATCTGGATGATGAGGTGCATAAAGAATATCAGTCTACCTGCAAAAGCAACAATGAGGAAGCTACTTTATCTACTGTTTCATTGGTAAATCAACCTATGCTTGCTTCTATGGATGAAAGTTTTGAAAGTCCAAACAACAATTATGCTGCTGAAAAAGTTAGCGATGGTATGTCATTAAAGGAGACAACTGGGCAAGAAATTAATTCTATGAGTGGGAGGGACAAGGAACCTCTCGGTGATGATAAACCAATAAGTGAATATACTCCAAATAGTGAAGTTTGTGAAGTTCCAAGACAGCCTTTTGCTGCTCCAGTCTTGAATGATACTGTTATGGATGCTGAGAGGCAGTGCCAAGCCCAAAATAAGAGGGAACTTATTGGGGAGCCTGTTTCTAGTTATGTTGCAAAAGGTGAAAATTCAAGTGTAACTTTGTCAGAATTAGGATGTTCTGAAGTTTCAGTGGAAGCATGTCCTGAAGAAGACTCATTTATTCAATTTATTTCAGATAAAGGAAGGGAACTGGAAATCCAACCAACTGATAGAAGGGATGAGGAAATTTGCTCTGGTACTAAGACACCGTTAAAGGACTCTTCTGTATCAATTCAGGAATGTTCTAAAAACGAGAAAGAGATGTGTGTAGGACAAAATTTAAATGGAAGTGAAGTTCATTTGTTACAAGATAACAGCGAACCAGAAAGCTCTGACTTGACTGCAGTAGTTCCCCATTCAAGTGCTCGGAAGAAAAGAAAGAGGGAAGTGGAACAGCTAACAGAGAACCAATCTGATTGCAGCAACTTTATAAGAAGTCCATGTGAAGGGCTGAGGCCTAGAGCTGGTAAGGTCACTACAGATAAAAGAAGTGGGGAGAGCAGTCAAAATGACAAAGAACATCAGGATAACAGAAGGGCACGTAGAGTTCCGGTTCCTCACAAGAATAAAACTGATGATGTCAAAAAGCCCCACAGTTGTGACCTTGACGGCTGTGAAATGAGTTTCACCACTAAGACTGAGTTACAGTTGCACAAACGTAATATTTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATACCTTGCTTCACCAGCGTGTTCATGATGATGAAAGGCCCCTCAAGTGCCCATGGAATGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTGCATACCGGGGAGAAACCTTATCAATGCAAGGTCGAGGGATGCGGCCTTTCCTTCAGGTTTGTATCAGATTTTAGTAGGCACAGGCGGAAAACAGGACACTATGTGCAATCTTCTTGA 4125 0.4148 MGNVEIPNWLEGLPLAPEFRPTETEFSDPIAYISKIEKESSTFGICKIIPPLPKPSKKYVFSNLNRSLLKCPELGQVNSSLGACNSLKTGYRDSSSDCAPRAVFTTRQQELGQSVKKAKGAGQNPISCVQKQVWQSGEVYTLEQFESKSKTFARSILGTVKDVSPLDIEAMFWKAASEKPIYIEYANDVPGSAFGESKGEFCYSPTKQRRKTCYKSRVDTSDCKQTELNSVRDAKSNETMGASSETHAGPCLKMYESAMPVSTFPLNEASQCSSEKSSEVSNDIQGRSGWKLSNSPWNLQSIAHSSGSLTRFMPDNIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYSVPGDYAFAFEEVIRCQAYGDNIDHLAALKLLGEKTTLLSPEIIIASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPEWLTIAKEAAVRRAVMNYLPMLSHQQLLYLLTMSFIPRVPRTLLPGARSSRLKDRQKEERELLVKKAFIEDMLQENKLISILLGKEATKQAVLWNADLLPNFSKHCQLSDLASTTNSSVADMSNSSSDKSSHYLFDETSLYMENQTDLYLGDVDDDLSRDFQTDSGPLACVGCGVLGFPFMTVVQPSEKLTVELFPVDHHLVQDSSPNSTASLHSSVSTKESSNLSLKAFDKHWNASSKFLRPRIFCLEHAVQIVNMLQCKGGANVLIICHSDYQKMKAHARAVAEETHSTFDYNEVPLEIASPENLTLIDLAIVAEQHDESEDWTSKLGINLRYCVNARHNSPSRQVPWTLDLGMLFPDKHSDLEFLSLNWQLRRSRSKRLNHSAQTKTCDKIQRNKDCQLEGRKDGSTVKKIVIHYSRRKFKSKQSCSSGLSMVHTFQEKSTNVSAVLSGKHYDCASKCEFDTSNFRSECALSGVSASTAMSPTHHEMSTKNLDDEVHKEYQSTCKSNNEEATLSTVSLVNQPMLASMDESFESPNNNYAAEKVSDGMSLKETTGQEINSMSGRDKEPLGDDKPISEYTPNSEVCEVPRQPFAAPVLNDTVMDAERQCQAQNKRELIGEPVSSYVAKGENSSVTLSELGCSEVSVEACPEEDSFIQFISDKGRELEIQPTDRRDEEICSGTKTPLKDSSVSIQECSKNEKEMCVGQNLNGSEVHLLQDNSEPESSDLTAVVPHSSARKKRKREVEQLTENQSDCSNFIRSPCEGLRPRAGKVTTDKRSGESSQNDKEHQDNRRARRVPVPHKNKTDDVKKPHSCDLDGCEMSFTTKTELQLHKRNICPHKGCGKKFSSHKYTLLHQRVHDDERPLKCPWNGCSMTFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVQSS* 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0156 1374 ProSiteProfiles Zinc finger C2H2 type domain profile. 1283 1312 IPR013087 -
Lan20g0156 1374 ProSiteProfiles Zinc finger C2H2 type domain profile. 1343 1374 IPR013087 -
Lan20g0156 1374 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1364 - -
Lan20g0156 1374 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lan20g0156 1374 SUPERFAMILY Clavaminate synthase-like 292 456 - -
Lan20g0156 1374 Gene3D Cupin 9 464 - -
Lan20g0156 1374 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Lan20g0156 1374 ProSiteProfiles Zinc finger C2H2 type domain profile. 1313 1342 IPR013087 -
Lan20g0156 1374 SUPERFAMILY beta-beta-alpha zinc fingers 1283 1320 IPR036236 -
Lan20g0156 1374 MobiDBLite consensus disorder prediction 1167 1258 - -
Lan20g0156 1374 Gene3D Classic Zinc Finger 1283 1367 - -
Lan20g0156 1374 Gene3D Classic Zinc Finger 1228 1282 - -
Lan20g0156 1374 MobiDBLite consensus disorder prediction 1004 1028 - -
Lan20g0156 1374 ProSiteProfiles JmjC domain profile. 284 460 IPR003347 -
Lan20g0156 1374 SMART JmjN_1 15 55 IPR003349 -
Lan20g0156 1374 SMART cupin_9 291 460 IPR003347 -
Lan20g0156 1374 MobiDBLite consensus disorder prediction 1217 1258 - -
Lan20g0156 1374 ProSitePatterns Zinc finger C2H2 type domain signature. 1345 1369 IPR013087 -
Lan20g0156 1374 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1364 - -
Lan20g0156 1374 ProSitePatterns Zinc finger C2H2 type domain signature. 1315 1337 IPR013087 -
Lan20g0156 1374 ProSitePatterns Zinc finger C2H2 type domain signature. 1285 1307 IPR013087 -
Lan20g0156 1374 SMART c2h2final6 1343 1369 IPR013087 -
Lan20g0156 1374 SMART c2h2final6 1283 1307 IPR013087 -
Lan20g0156 1374 SMART c2h2final6 1260 1282 IPR013087 -
Lan20g0156 1374 SMART c2h2final6 1313 1337 IPR013087 -
Lan20g0156 1374 SUPERFAMILY beta-beta-alpha zinc fingers 1323 1365 IPR036236 -
Lan20g0156 1374 Pfam jmjN domain 17 50 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0156 Lan-Chr20 1003928 1011191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0156 1 868 C2H2 Transcription Factor Family AT5G04240 55.995 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0156 JmjC 4.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0156 - - adu:107467970 1660.2