Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0155 ATGGGTTTGATCAGCACTTTCTTGGGGATTATTGGTTTTGTTATTGGAATCCTTCTTGGCCTCTTGATTGGTTTCTTTGTGTTTATTTATTCTCAAGATACCAAACAAGTCAAGGACCCTGTTGTTAGACCAATTGCTGAATTAGGCCCAAAAGCTTTGCAAGAACTTCTACCTGAGATTCCTCTGTGGGTGAAAACACCTGATTATGAACGAGTTGATTGGTTGAACAAGTTTTTGCTAGATATGTGGCCTTTCTTAGACAAGGCAATTTGTCGGATGATTAGAATCATAGTTAAACCAATATTTGCTGAATACATTGGGAAATATCAGATTAAAGGAATTGAATTTGATAAGTTGAGCCTTGGTACTCTCCCTCCTACTATTTGTGGTATTAAAGTGTTACAAACAAATGAAAAGGAATTGGTCATGGAACATGTGATCAAATGGGCTGGCAATCCAAACATAGTGTTGGATTTGCATGTATCATCTTTGAAGATCTCATTTCAGTTGTTAGACTTACAAGTATTTGTGACATCACGGATAACTTTAAGACCTTTAGTGCCTACATTTCCCTGTTTCGCAAAGATTGTGGTATCCTTGATGGAGAAGCCTCATGTGGATTTCGGGATGAAAATATCCGGAGGTGACATCATGGCCATACCTGGTCTTTACAGATTTGTTCAGGAAACAATAAAAAAGCAAGTTGCGAGCCTCTATCTCTGGCCTCAAACCCTGGAAATTCCTATTCTGGATGAATCGACGGTGGCTATCAAGAAGCCTGTGGGAATATTACACGTAAATGTAGTTCGGGCACATAAGCTTTTGAAGATGGATTTCTTGGGAACTTCTGATCCTTATGTCAAACTAACCCTGACTGAAGACAAACTTGCAGCAAGGACAACCACTATCAAGAGGCGGAATTTGAATCCGGAGTGGAATGAGAAGTTCAAGCTTGTTGTGAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTGGTGCACATGACAGGCTTGGAATGCAATTAATCCCTCTTAAGGTTCTTAAACCCTATGAGAATAAAGCATTTACACTTGAATTACTTAAGGACGCAAATACGAACGAAACTCCGAAGAAGAAGAATAGAGGGCAGATTGTGGTGGACTTAACTTTTGTTCCATTCAAAGAAGATAGTATAAAGTTTGGTGGATCTATGGAAGGATATAGAAGTAAGAAAAGTAGAATTGATGATGAGGTAGAAGAAGGAGCAGGTTTACTTTTACTTGTGATACAAGAAGCTGAGGAGGTTGAGGGGGATCATCACAATAACCCATATGCAGTGCTTACCTTTAGAGGTGAAAAGAAAAGAACAAAGATGATGAGGAAAACTCGTAACCCACGTTGGAGTGAAGAATTCCAATTCATGCTAGAAGAGCCACCTCTACATGAGAAAATACACATTGAGGTTTTGAGCAAGAGGAGGAGGTTTAGTTTTCTATCAAAAGAATCACTAGGGTACGTGGAGATAAATCTGAATGATGTGGTGCACAATGGTCGAATTAATGATAAATATCACCTTATAGATTCAAAGAATGGAGTTATACATGTTGAGATACGATGGACAACAATTTGA 1629 0.3892 MGLISTFLGIIGFVIGILLGLLIGFFVFIYSQDTKQVKDPVVRPIAELGPKALQELLPEIPLWVKTPDYERVDWLNKFLLDMWPFLDKAICRMIRIIVKPIFAEYIGKYQIKGIEFDKLSLGTLPPTICGIKVLQTNEKELVMEHVIKWAGNPNIVLDLHVSSLKISFQLLDLQVFVTSRITLRPLVPTFPCFAKIVVSLMEKPHVDFGMKISGGDIMAIPGLYRFVQETIKKQVASLYLWPQTLEIPILDESTVAIKKPVGILHVNVVRAHKLLKMDFLGTSDPYVKLTLTEDKLAARTTTIKRRNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGAHDRLGMQLIPLKVLKPYENKAFTLELLKDANTNETPKKKNRGQIVVDLTFVPFKEDSIKFGGSMEGYRSKKSRIDDEVEEGAGLLLLVIQEAEEVEGDHHNNPYAVLTFRGEKKRTKMMRKTRNPRWSEEFQFMLEEPPLHEKIHIEVLSKRRRFSFLSKESLGYVEINLNDVVHNGRINDKYHLIDSKNGVIHVEIRWTTI* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0155 542 CDD C2 442 526 - -
Lan20g0155 542 Gene3D C2 domain 424 541 IPR035892 -
Lan20g0155 542 PANTHER SYNAPTOTAGMIN-3 1 542 - -
Lan20g0155 542 PRINTS C2 domain signature 279 291 IPR000008 -
Lan20g0155 542 PRINTS C2 domain signature 306 319 IPR000008 -
Lan20g0155 542 PRINTS C2 domain signature 328 336 IPR000008 -
Lan20g0155 542 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 542 IPR045050 GO:0008289
Lan20g0155 542 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 394 IPR035892 -
Lan20g0155 542 ProSiteProfiles C2 domain profile. 405 523 IPR000008 -
Lan20g0155 542 CDD C2 264 356 - -
Lan20g0155 542 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 423 540 IPR035892 -
Lan20g0155 542 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Lan20g0155 542 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 68 250 IPR031468 GO:0008289
Lan20g0155 542 Pfam C2 domain 262 356 IPR000008 -
Lan20g0155 542 Pfam C2 domain 427 524 IPR000008 -
Lan20g0155 542 Gene3D C2 domain 257 412 IPR035892 -
Lan20g0155 542 ProSiteProfiles C2 domain profile. 241 364 IPR000008 -
Lan20g0155 542 SMART C2_3c 263 363 IPR000008 -
Lan20g0155 542 SMART C2_3c 424 522 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0155 Lan-Chr20 980314 984543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0155 252 478 Lipid Metabolism Gene Families AT1G22610 28.279 1.61e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0155 - - gmx:100813029 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0712 8 9221530 9226279 Lan20g0155 20 980314 984543 LSH