Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0152 ATGGACAAGATAGTGGGACCAAACTTCATGGACGAGATTGATTGCGGCAACTTCTTTGACCACATCGATGATCTTCTTGACTTTCACGTTGAAGACGACGTGGACGGCAGCGCCACCACCTTGCCAGACGTCTCAGCTGCCGGAAACTGCAACTCACTTGTCAGCATCTGGCCACCGGAGACTGACCTCTCCGTGGAGCTCTCTGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTGTCTAACTTTGTGGAGGATTCCTTCTCTGGTGGAAGCCTCACCATGAGCACAGTGGAGCAACCATCCACCACCACCACCACCACCACCACTACCACCAAGGAGGACTCATCATCAGTTCACACCCAATTCCAGACATCTAGCCCAGTGTCTGTCCTCGAAAGCAGCAGCTCCTATTCTGGTGGTAAGACCATCCCTCGCAGCAGCCCGAAGATTTATATCCCGGTGCCTTGTGGACGTGCACGCAGCAAGCGTCCACGCCGGGCTGCCTTCAATCCTCGCCCGGCAATGCAACTCATCTCCCCTGCTTCCTCTTCTGTTGGGGAGAATATGCAGCCTAATGTTATCTCTGCCAAGGCCTCTTCAGACTCTGAGAATTTTGCTGAGTCTCAACCCTTGGCAAAGATTCCAAAACAAGGTTCCGGGGAGCATAAGAAGAAAAAGAAAATCAAACTCTCACTTCCATCAGCTCCAGTTGCTGATGATACTAACCAGATCGTTCAAGCAATCAGGAAATGTATGCATTGTGAAATAACTAAGACACCACAGTGGAGGGCCGGGCCAATGGGGCCAAAAACACTTTGCAATGCGTGTGGCGTTCGCTACAAGTCCGGCCGGCTTTTCCCTGAATACCGACCTGCTGCTAGTCCAACTTTTTGTCCATCCGTACACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGAGTATTGAGGAAACTAGTTTTGGAACCCATTCAGCTGCTTCTCCAGAACTCATTCCAAATACTAACAGCAGCATCCTTACCCTGGAGTAA 1038 0.5029 MDKIVGPNFMDEIDCGNFFDHIDDLLDFHVEDDVDGSATTLPDVSAAGNCNSLVSIWPPETDLSVELSVPYEDIVQLEWLSNFVEDSFSGGSLTMSTVEQPSTTTTTTTTTTKEDSSSVHTQFQTSSPVSVLESSSSYSGGKTIPRSSPKIYIPVPCGRARSKRPRRAAFNPRPAMQLISPASSSVGENMQPNVISAKASSDSENFAESQPLAKIPKQGSGEHKKKKKIKLSLPSAPVADDTNQIVQAIRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRSIEETSFGTHSAASPELIPNTNSSILTLE* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0152 345 Pfam GATA zinc finger 252 285 IPR000679 GO:0006355|GO:0043565
Lan20g0152 345 SMART GATA_3 246 296 IPR000679 GO:0006355|GO:0043565
Lan20g0152 345 ProSiteProfiles GATA-type zinc finger domain profile. 246 282 IPR000679 GO:0006355|GO:0043565
Lan20g0152 345 Gene3D - 247 296 IPR013088 GO:0006355|GO:0008270
Lan20g0152 345 PANTHER GATA TRANSCRIPTION FACTOR 8 5 341 - -
Lan20g0152 345 MobiDBLite consensus disorder prediction 201 231 - -
Lan20g0152 345 MobiDBLite consensus disorder prediction 94 144 - -
Lan20g0152 345 PIRSF Txn_fac_GATA_plant 3 340 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lan20g0152 345 ProSitePatterns GATA-type zinc finger domain. 252 277 IPR000679 GO:0006355|GO:0043565
Lan20g0152 345 MobiDBLite consensus disorder prediction 94 157 - -
Lan20g0152 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 309 - -
Lan20g0152 345 CDD ZnF_GATA 251 308 IPR000679 GO:0006355|GO:0043565
Lan20g0152 345 PANTHER GATA TRANSCRIPTION FACTOR 5 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0152 Lan-Chr20 953609 957977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0152 22 314 C2C2-Gata Transcription Factor Family AT4G32890 38.284 6.39e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan20g0152 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0152 - - lang:109340763 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0714 8 9247498 9250732 Lan20g0152 20 953609 957977 LSH