Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0151 ATGTTTATGGTTAATTCCATGGAGAGGAAGAGCTCAGATTCAGAAAGGTGCTTTGATTCTCAACTATGGCATGCCTGTGCAGGTGGCATGGTTCAAATGCCACCTCTCAATACAAAAGTTTTCTACTTTCCTCAGGGTCATGCAGAACATGCACATGGAAAACTAGATTTTGGTCAAACCAGTGTTCCACCACTTATCCCTTGCAGGGTCTCAGCTATGAAATTCATGGCAGACCCTGACACAGATGAGGTTTTTGTGAAAATGAGGCTGAACCCTTTGAGAGATAATGAATTGAATTTTGAAGATGATTGTTTCTTAGGAAACAATAATGGTGCTGAGACTCAAGATAATAAACCAGCTTCTTTTGCTAAGACATTGACACAATCTGATGCCAATAATGGTGGAGGTTTTTCTGTGCCTCGTTACTGTGCTGAGACTCTTTTCCCAAGGTTGGATTATTCAGCAGAACCACCATTTCAGACCATTATTGGCAAGGATGTGCATGGACAGTGCTGGAAGTTCAGGCATATCTATAGAGGGACACCAAGGAGGCATCTTTTAACAACTGGTTGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCCATTGTGTTTATAAGAGGAGAGAATGGTGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAAGGAGGAATTGGTGGAGGGATTGAGTTATCTTCTTGTTGGAACAACAACCATGCAGCCCTTCCTCTATTTGGTGGTGGTTCTGGTTTCTTGATGAGGAGAAAAGGAAGTGATGAGTTTGTGAGAAGAGTGGCTGTTGAATATGTTGTTGAAGCTGTAACTTATGCTGTTAATAGAAGACCCTTTGAGGTTGTGTACTATCCAAGGGCTAGTACCCCAGAGTTTTGTGTTAAGGCTTCTTCTGTGAGGAATGCAATGCAAATACAGTGGTGTTATGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATCTCTTCTGTTCAGGTTGCAGATTCCATTCATTGGCCTCATTCTCCTTGGCGTCTTCTGCAGGTAGTGTGGGATGAACCAGACCTACTTCAAAATGTTAGGAGTGTAAATCCTTGGTTGGTTGAACTTGTCACAAGCATTCCCACCTTCCATCTCTCTCAATTTTCACCACCAAGAAAGAAACAAAAATTTCTTAAGGACCAAGTAGTTCACCTCAACAACCAACTTCCATTACCATCACTCTCCACCAATCTTCTTCTCAAAAATCCTCATACTAACTCTCTATGTAGAATTGAAGACCATAGTTTTTCAAGCATACAGGGACCCAGGCATGCTCAATCTGGACTAACTCCACCTGATTTTTCCTTCAACAACAAGCAGATGCAACCAGAAACACATCTTTTTTGCCTCCAAAGGCTTCACCATGCAACACAACCATTTAGACCATCTTGTAGAATCTATAAAAGTAGCACTAAGAACAATAATGTTGACATATCTTGCTTGTTGACTGAAGGAAAACCTGGCCAAAGTTTAAAGGAATCAGATGAAGCAAAAGCACCACATATCTTGTTATTTGGGAAACTCATTCATGCAGAGCAGAATAGTTCAAACAGTAGCATTTTTGGTATAAATGGAAATAGTGCATCTGAAAGTACTTCACAGAAGACATCAAATGCTTCTGATATTCAGGGTTCTACTGATGGAGGGTCTCCCTGGTACAAAGATCAGCACCAATCTGATCTTGCAACTGAAAATGTTAACATGCTATGTATGGCTTTGTAA 1797 0.4107 MFMVNSMERKSSDSERCFDSQLWHACAGGMVQMPPLNTKVFYFPQGHAEHAHGKLDFGQTSVPPLIPCRVSAMKFMADPDTDEVFVKMRLNPLRDNELNFEDDCFLGNNNGAETQDNKPASFAKTLTQSDANNGGGFSVPRYCAETLFPRLDYSAEPPFQTIIGKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFIRGENGDLCVGIRRAKKGGIGGGIELSSCWNNNHAALPLFGGGSGFLMRRKGSDEFVRRVAVEYVVEAVTYAVNRRPFEVVYYPRASTPEFCVKASSVRNAMQIQWCYGMRFKMPFETEDSSRISWFMGTISSVQVADSIHWPHSPWRLLQVVWDEPDLLQNVRSVNPWLVELVTSIPTFHLSQFSPPRKKQKFLKDQVVHLNNQLPLPSLSTNLLLKNPHTNSLCRIEDHSFSSIQGPRHAQSGLTPPDFSFNNKQMQPETHLFCLQRLHHATQPFRPSCRIYKSSTKNNNVDISCLLTEGKPGQSLKESDEAKAPHILLFGKLIHAEQNSSNSSIFGINGNSASESTSQKTSNASDIQGSTDGGSPWYKDQHQSDLATENVNMLCMAL* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0151 598 Pfam Auxin response factor 277 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan20g0151 598 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Lan20g0151 598 CDD B3_DNA 121 222 IPR003340 GO:0003677
Lan20g0151 598 PANTHER AUXIN RESPONSE FACTOR 16 10 570 - -
Lan20g0151 598 SUPERFAMILY DNA-binding pseudobarrel domain 113 222 IPR015300 -
Lan20g0151 598 MobiDBLite consensus disorder prediction 552 583 - -
Lan20g0151 598 Gene3D - 120 224 IPR015300 -
Lan20g0151 598 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lan20g0151 598 SMART B3_2 122 224 IPR003340 GO:0003677
Lan20g0151 598 Gene3D - 313 387 - -
Lan20g0151 598 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 570 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0151 Lan-Chr20 949518 951810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0151 3 584 B3 DNA Binding Superfamily AT4G30080 52.373 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan20g0151 B3 3.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0151 - - gmx:100803053 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0716 8 9260380 9263695 Lan20g0151 20 949518 951810 LSH