Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0125 ATGTCTGGGAGCTCAAATTGCACTGTTTACATTGGTAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATCCTGATTCAGGCAGGACCAGTGGTAGATTTGCACATCCCTAAAGATAAGGAAACAGATAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGGTCGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTGACACTCTACAACAGAACACTGAAGTTTGCGTCTGCTAATAAACAGATATCTGGGAAAGACAAAACTACCTCTAAAGGTTCTACTGCAATTACACCCACATCAAATTCTTCTCAGCGACCAAGGCCTTACCAAATGCCTATAAATAACTCAGAAAATTTTCCGCACTCCAATAGACTATCAACTCCTGACCGGTTTTCAGATTATGCTGTGAATCATTCCCAAGTTCCTCCTCTTCATGTGACTGACCAATCTAGTGGGTATGGATCTCACCACACTGTTAACAATTATGAATACAGTCGGAGAGCTTTTGGTGGAACATTGGATAACATTAGCCATTCTAGGTCACGCCGCCATGAGAGAAGTAGCCCAATCACATACCCATCTTACTAA 606 0.4257 MSGSSNCTVYIGNLDERVTDRVLYDILIQAGPVVDLHIPKDKETDKPKGFAFAEYETEEVADYAVRLFSGLVTLYNRTLKFASANKQISGKDKTTSKGSTAITPTSNSSQRPRPYQMPINNSENFPHSNRLSTPDRFSDYAVNHSQVPPLHVTDQSSGYGSHHTVNNYEYSRRAFGGTLDNISHSRSRRHERSSPITYPSY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0125 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Lan20g0125 201 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Lan20g0125 201 PANTHER OS01G0876500 PROTEIN 1 201 - -
Lan20g0125 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Lan20g0125 201 Gene3D - 2 96 IPR012677 -
Lan20g0125 201 MobiDBLite consensus disorder prediction 179 201 - -
Lan20g0125 201 MobiDBLite consensus disorder prediction 87 134 - -
Lan20g0125 201 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 201 - -
Lan20g0125 201 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0125 Lan-Chr20 753342 756485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0125 7 66 Eukaryotic Initiation Factors Gene Family AT2G23350 31.667 6.63e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0125 K12831 - gmx:100803118 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0125 20 753342 756485 Lan4g1776 4 26466053 26469167 LSH