Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0114 ATGGGTATCTTCAATCTTCTCTTGTTTTTCTTCTATTTGCTGGGTTTATGTGCCATGGCGGCTTCCGAGGTGGTTCTGATTGGGGACAATGTCACTCTCTCCTTCAATGATATTGAAGCTAATTTCGCTCCCACAGTCAAAGGGTCTGGAGAATGTGGGGTTTTATATTTAGCAGAGCCACTTGATGCATGTACAGAACTGACAAATAAAGTTGATCATCTTTCAAATGTGAGTTCACCTTTTGTTTTGGTTGTTAGAGGAGGATGTAGCTTTGAGGAAAAGGTCAGAAGTGCACAAAGAGCTGGATACAAAGCTGCAATTGTCTATGACAATGAAGATAGCGATGTCTTGGTTGCAATGGCCGGAAATTCTGCTGGTATAAGAATACACGCTGTATTTGTATCAACAACTTCAGGTGAAATACTAAAGAAATACGCTGGATCAACTAATATGGAACTATGGCTCATTGAAACTTTTGAAAACTCAGCTTGGTCTATCATGGCAATTTCATTTATCTCCCTACTAGCTATGTCTGCAGTGCTGGCCACCTGTTTCTTTGTCAGGAGGCATCATATAAGAAGAGAAAGGCCTCGAGCTTCTCATGTTCGCGATTTTCATGGTATGAGCAGTCACCTAGTGAAGGCAATGCCAAGTTTGATATTTAATGCTGTTTTAGAAGATAACTACTGCACATCAAGAACATGTGCTATATGCCTTGAAGACTACTGTGTTGGAGAGAAACTTAGGGTGCTGCCTTGCTGTCACAAATTTCATGCTGTCTGCGTGGATTCATGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGTAAGCGTGACGCGAGAACTGGTTTAACCGATCCACCACCTTCAGAATCCACACCTTTGCTTTCAACAAGCTTTGCATCTGTGGCATCCTCTATCTTATCTTCTGGGAGGTCATCATTAGCATCATCTTCCGCAATACAAATTGCCCGTGCACCATCACAGTCCCCATCTGTTTCTCGCAACCACTCTTTAGCTAGTATGTCCTATGTTCAGCCATCTTTCAGGTCTTACCGTCAGTCGCCCTCCCTAAGCATCAGCCGAAGCTCTGTAGATCTTAGGAACGGATCCCAAAGATCTCAAGCATCTCACTTGAATTTACCATGTTCAACGGGTTACCCATCTTTGTCATCTCTTAATTCAAGGTATATGTCGCCATACATACCAAGTCCAAGCAACGCTTCAGTAAGTTACATGGGTTCCTCTAGTCACCAACAGCATCCGCTTCGTTATAGCGAGTCAGCCGCGACCTTCTCACCATTTGCATCTGCAAACTCCCTTCCAGAAGTTTAA 1335 0.433 MGIFNLLLFFFYLLGLCAMAASEVVLIGDNVTLSFNDIEANFAPTVKGSGECGVLYLAEPLDACTELTNKVDHLSNVSSPFVLVVRGGCSFEEKVRSAQRAGYKAAIVYDNEDSDVLVAMAGNSAGIRIHAVFVSTTSGEILKKYAGSTNMELWLIETFENSAWSIMAISFISLLAMSAVLATCFFVRRHHIRRERPRASHVRDFHGMSSHLVKAMPSLIFNAVLEDNYCTSRTCAICLEDYCVGEKLRVLPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSTSFASVASSILSSGRSSLASSSAIQIARAPSQSPSVSRNHSLASMSYVQPSFRSYRQSPSLSISRSSVDLRNGSQRSQASHLNLPCSTGYPSLSSLNSRYMSPYIPSPSNASVSYMGSSSHQQHPLRYSESAATFSPFASANSLPEV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0114 444 CDD PA_C_RZF_like 20 157 IPR044744 -
Lan20g0114 444 Pfam Ring finger domain 234 277 IPR001841 -
Lan20g0114 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 282 IPR013083 -
Lan20g0114 444 SUPERFAMILY PA domain 76 152 IPR046450 -
Lan20g0114 444 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 379 - -
Lan20g0114 444 SUPERFAMILY RING/U-box 220 286 - -
Lan20g0114 444 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 379 - -
Lan20g0114 444 Gene3D - 24 156 - -
Lan20g0114 444 SMART ring_2 235 276 IPR001841 -
Lan20g0114 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lan20g0114 444 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lan20g0114 444 Pfam PA domain 72 142 IPR003137 -
Lan20g0114 444 MobiDBLite consensus disorder prediction 360 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0114 Lan-Chr20 683629 688228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0114 21 443 C3H Transcription Factor Family AT1G22670 48.736 7.98e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0114 K15692 - gmx:100791248 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0741 8 9634192 9639716 Lan20g0114 20 683629 688228 LSH
Lan20g0114 20 683629 688228 Lan4g1790 4 26546028 26551097 LSH