Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0106 ATGGCCTCCTCTTCCCAGCATCGTTGCGTTTTTGTTGGGAATATACCTTATGATGCCACAGAGGAACAGCTTATTGAAATTTGCCAGGAAGTTGGCCCTGTTGTCTCTTTCAGATTAGTTGTTGATAGAGAAACTGGAAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAAACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATCAAATTAATGGGAGACAGTTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGTCTGACAGCAAATGTTGACCCTCAGAAACAAGTCGTTAGTCCTGCTGTCCATGGGGAAGCTGCTCAGCATCAACCTATTGGTCTTCATATTGCGATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGAGGTGCTCAGTTTAGCACCCAGTCAAATCAAAATGCTTTGCAGAGTCAGTCGGCATTGGCACACGACCCTTTAACCCTGCATCTCGCCAAAATGTCCAGGAGTCAATTGATTGATATTCTCTCTGATGTCAAGGCAATGGCTACGCAGAACCGGGACCTGGCTCGCCAGCTGTTACTTTCAAGACCACAGTTGCCTAAGGCCCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAATCTTAGGTTGGTTTCAGATCAAGCCTCACAGCTTTCAATAAAAGAAGGCCAGCTAGGTCAGCCAGCATTGCTTCAAACTCTGTCTGGTTTGCTACCTCATGGACAGAACCAGTTGCAGTCTGGTTTGATGCCTTATGTTCAAGATGGCCAAGTCAGCTCCATACCTCATAATCCTTTGATTCCTAATCAATTGACTGCACATCCAAAGCCTCCAGTGCAACCTCGGATTCAACCCCAACAACATCCAAGCAACCATGTTGTACAGCTAGGAACATTGCAGGGGCCATCTAATTTAATGCTTCCTTCTGTGCGTCCCCAGATATTGGGAAGTGTACCTGTCAGGCCTCCAATTCAACCAGCAACTGTAGGACATAATAATGCTCAGCTGGTTCGTTTGGATGCAAGCTTTCAGCCTGGCCCCTCCATATCATCAGGTAGTTCTCAGTTAATTAATAGGGGAAGTGATACATCTGCTAAAGTTCTAGAGGATTTAAGTTGGGCCCAAAGAAGTAGTACATATTCAAAGGCACCAATGGGATTAGAGAAAACAAACATGGTTCATGATTCTTCAGAGTCTTTTACTCGGCCTTCAAAGCTCATGAAAATGGACCAAGGCAGCAGCACATATTTTTCTGCAGGGATTGCGGATGTGCCTGTCACTAATGGATCATCCCGTGTAGTTGGAAGTAGTTCATTGCCTGTGCATCCAACTCCTATAGCAGAAGTGCAGCAACCACCTCAGCCTCAGGTTCCACCTGATGTAGAGTCTGCCTTACTACAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAAATGCAGCAACCCTCATAG 1590 0.4579 MASSSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVVDRETGKPKGYGFCEYKDEETALSARRNLQGYQINGRQLRVDFAENDKGNDRNREQGRGGPGLTANVDPQKQVVSPAVHGEAAQHQPIGLHIAITAAAVMTAALGGAQFSTQSNQNALQSQSALAHDPLTLHLAKMSRSQLIDILSDVKAMATQNRDLARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQASQLSIKEGQLGQPALLQTLSGLLPHGQNQLQSGLMPYVQDGQVSSIPHNPLIPNQLTAHPKPPVQPRIQPQQHPSNHVVQLGTLQGPSNLMLPSVRPQILGSVPVRPPIQPATVGHNNAQLVRLDASFQPGPSISSGSSQLINRGSDTSAKVLEDLSWAQRSSTYSKAPMGLEKTNMVHDSSESFTRPSKLMKMDQGSSTYFSAGIADVPVTNGSSRVVGSSSLPVHPTPIAEVQQPPQPQVPPDVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQQPS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0106 529 Gene3D - 157 231 - -
Lan20g0106 529 Gene3D - 1 111 IPR012677 -
Lan20g0106 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lan20g0106 529 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 523 - -
Lan20g0106 529 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lan20g0106 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Lan20g0106 529 Gene3D - 484 525 IPR038192 -
Lan20g0106 529 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 229 IPR025742 -
Lan20g0106 529 MobiDBLite consensus disorder prediction 459 484 - -
Lan20g0106 529 MobiDBLite consensus disorder prediction 85 108 - -
Lan20g0106 529 CDD RRM_CSTF2_CSTF2T 10 84 - -
Lan20g0106 529 Pfam Transcription termination and cleavage factor C-terminal 489 522 IPR026896 GO:0031124
Lan20g0106 529 SUPERFAMILY RNA-binding domain, RBD 5 102 IPR035979 GO:0003676
Lan20g0106 529 MobiDBLite consensus disorder prediction 500 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0106 Lan-Chr20 630894 636019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0106 10 83 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.92e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0106 K14407 - gmx:100806489 735.717