Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0093 ATGGCCATTGATCACACCTTCGTTGCCATTCTCTCTGCCATCGCCACTTTCCTTGTAGTCTCTCTCATCTTCACCATCATCATCCTTCTCTGCCACCGCCACAATTCCTCCAAAACTCGCACCAACGCCGTCCGAACCCGACCCGCTCCGAACCCTAATCTATCCCATTCCGTCTCCCTCGTCGACGCCAGCTGGTCCTTCGACCCAAACCTCAAGATCTCTATGGAAGAACTCGCACACGCCACCAACAACTTCTCCTCTCACCTCATCGTCGGCGATGGAAGCTTCGGCCTCGTCTACAAGGCCCGCCTCTCCTCCGGCGTCCTCGTCGCCGTCAAAAAACTCTCACCGGACGCCTTCCAGGGCTTCCGCGAGTTCAGGGCGGAGATGGAAACCCTAAGTAAGGTCCGCCACCACAACATCGTCAAGATCCTTGGATACTGGGCCTCCGGCCCCGAGCGGTTACTCGTCTACGAGTTCATCGAGAAAGGAAGCCTGGATCAGTGGCTTCACGAACCCTCTTTCGTTAACGGCGACGGTATCAACGACGTAGTTCGTTTACCTTTGTCTTGGGAAACAAGAGTCAAGATAATGAACGGTGTGGCCCACGGGCTTTGTTACCTTCATGGGCTTGACAGCCCAATTATTCATAGAGATATTAAGGCTAGTAATGTTTTATTGGATTCTGAGTTTGAGGCCCATATTGCTGATTTTGGGCTTGCAAGGAGAATCAATTCGGCCCATTCACACGTGTCGACGCAGTTTGCCGGGACGATGGGTTACATGCCCCCTGAGTATAGGGATGGGCTTAAGGTGGTTAACAAGAAGGTTGATGTGTATAGTTTTGGGGTGTTGATGCTCGAAACGATGTCCGGTCAGAGGCCCAATTTGCCGAAGAAGTTGGGCCAGACAGATATAGGGATAGTCCAGTGGGCCAGGAAGATGAAGGAGGAAAATGATGAAATGGAAATGGTTGATGTGAATATATCAAGGGAGGGAATGAGGGAAGAGAGTGTGAAAGAGTATGTAAGGATTGCTTGTATGTGTACAGGTGAGTTACAAAAGGAGAGACCTGAAATGTCTCATGTTGTTCAGTTGTTGGACTCAATGTAA 1113 0.5058 MAIDHTFVAILSAIATFLVVSLIFTIIILLCHRHNSSKTRTNAVRTRPAPNPNLSHSVSLVDASWSFDPNLKISMEELAHATNNFSSHLIVGDGSFGLVYKARLSSGVLVAVKKLSPDAFQGFREFRAEMETLSKVRHHNIVKILGYWASGPERLLVYEFIEKGSLDQWLHEPSFVNGDGINDVVRLPLSWETRVKIMNGVAHGLCYLHGLDSPIIHRDIKASNVLLDSEFEAHIADFGLARRINSAHSHVSTQFAGTMGYMPPEYRDGLKVVNKKVDVYSFGVLMLETMSGQRPNLPKKLGQTDIGIVQWARKMKEENDEMEMVDVNISREGMREESVKEYVRIACMCTGELQKERPEMSHVVQLLDSM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0093 370 Pfam Protein tyrosine and serine/threonine kinase 90 367 IPR001245 GO:0004672|GO:0006468
Lan20g0093 370 Gene3D Transferase(Phosphotransferase) domain 1 161 370 - -
Lan20g0093 370 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 4 369 - -
Lan20g0093 370 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Lan20g0093 370 PANTHER OS01G0253100 PROTEIN 4 369 IPR045271 GO:0004714|GO:0006468
Lan20g0093 370 SMART serkin_6 85 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0093 370 CDD STKc_IRAK 91 370 - -
Lan20g0093 370 SUPERFAMILY Protein kinase-like (PK-like) 60 367 IPR011009 -
Lan20g0093 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lan20g0093 370 Gene3D Phosphorylase Kinase; domain 1 52 160 - -
Lan20g0093 370 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0093 Lan-Chr20 543158 544741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0093 69 367 Receptor kinase-like Gene Family AT5G07280 44.667 8.18e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lan20g0093 PK_Tyr_Ser-Thr 7.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0093 - - lang:109335579 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0093 20 543158 544741 Lan20g0093 20 543158 544741 ECH