Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0092 ATGGATCCTCATGTCGAAGAATTGCCTCAATACATACATATAATTCAGAATGATTTTTTAACAAGAAGGCATAAGAAGCAGAAGGAGGAGGATATCGCTATATGTGAATGCAAATATAATGCTAATGATCCTGATAGTGCATGTGGAGATGGCTGCCTGAATGTATTAACCAGCACTGAGTGCACCCCTGGTTATTGTCCCTGTGGTATTGTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGCTGTTTAAAACTGAAGGACGTGGATGGGGTCTGGTGGCTGATGAGAACATTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCTTGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTGTCTTCATGCCTCTGAATCTATTGATGCAACTAGAAAGGGAAGCCTTGGTAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACCAGAAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAGCTGAATTGGCATATGACTACAATTTTGAATGGTTTGGAGGTGCGAAAGTTCGCTGTCTCTGTGGCGCACTCAAATGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGACGACGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAGGATGAACCGGTGTCAAGGCTAAGATACTTGAACTCAGAGACTTATGTGAACAATTTTGTTGGTAGAACTGAACATTCCATGGATGATATACTCATAGCTGAGAACCTATCAGAGGCTACTACTTTTAATGTTCAGCCACTTGATTCAGTTCAGATGATGGATTTAGATGTGAAGACAATTAAAACTGAAGTAGTAAGCAGTGATAGGAAATTGTACACCCAAGACACTGAACAGGATTTCCCCCAAAAGAATAATGCAATCGTATCACGTATCCGAAGTACTACTGCAGGCAGAAACTATCGCATCGGACCAGGATCCATATCTACCAAAAGATCATCAAGGGCATATAATGGTGGTAGGTTAAAGAATCCCATACAGAAGAAAGTTGATGCAAAGTTTGCAGCTGGACTCTTAGCATCAAAAGAAGCTCAAGACGAGATTTTAAAATGCGAGGAAATAAAAAATGACGCAACATCTGGTCTTGATTATTTATACAATGAAATAAGGCCTGCGATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACTAGTGTAGCAGAGAAGTGGATAGAAGCTTGCTGTCTAAAATTGAAAGCAGAGTTTGACCTTTACTCCACAATTGTCAAAAACTTTGCTTGCACTGCTCACAACCCACCTGGCCAACCAAAACCTACTCAAGTTGATAATAATGACAACGAAATTAAGCTTTTGACAGGTTGA 1491 0.3944 MDPHVEELPQYIHIIQNDFLTRRHKKQKEEDIAICECKYNANDPDSACGDGCLNVLTSTECTPGYCPCGIVCKNQKFQKCEYAKTKLFKTEGRGWGLVADENIKAGQFVIEYCGEVISWKEAKRRSQAYETQGLKDAFIICLHASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGAELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSRLRYLNSETYVNNFVGRTEHSMDDILIAENLSEATTFNVQPLDSVQMMDLDVKTIKTEVVSSDRKLYTQDTEQDFPQKNNAIVSRIRSTTAGRNYRIGPGSISTKRSSRAYNGGRLKNPIQKKVDAKFAAGLLASKEAQDEILKCEEIKNDATSGLDYLYNEIRPAIEEHERDSQDSVSTSVAEKWIEACCLKLKAEFDLYSTIVKNFACTAHNPPGQPKPTQVDNNDNEIKLLTG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0092 496 SUPERFAMILY SET domain 17 220 IPR046341 -
Lan20g0092 496 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Lan20g0092 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 6 434 - -
Lan20g0092 496 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Lan20g0092 496 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Lan20g0092 496 Pfam AWS domain 43 80 IPR006560 GO:0005634|GO:0018024
Lan20g0092 496 MobiDBLite consensus disorder prediction 356 371 - -
Lan20g0092 496 MobiDBLite consensus disorder prediction 356 375 - -
Lan20g0092 496 SMART set_7 83 206 IPR001214 GO:0005515
Lan20g0092 496 Gene3D SET domain 2 235 IPR046341 -
Lan20g0092 496 PANTHER SET DOMAIN PROTEINS 6 434 - -
Lan20g0092 496 Pfam SET domain 94 200 IPR001214 GO:0005515
Lan20g0092 496 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0092 Lan-Chr20 537542 542930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0092 65 222 C2H2 Transcription Factor Family AT2G23740 34.807 3.24e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan20g0092 SET 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0092 - - lang:109335575 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0092 20 537542 542930 Lan20g0092 20 537542 542930 ECH