Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0089 ATGGCTGAACCTTCCAAGGTCATTCATATTCGAAATGTGGGGCAGGAAATATCTGAAGCTGATTTGCTCCAGCTATTTCAGTCTTTTGGAGTCATAACGAAGCTAGTAATGCTGCGAGCAAAAAACCAGGCTCTTATCCAAATGCAAGATATTGCTACTGCAGTTAGTGCTTTACAATTTTATGAAAATATTCAGCCAAACATAAGGGGAAGGAATGTCTATATCCAGTTTTCCTCACATCAGGATCTAGCACCAACCGATCAAAATCAAGGACGAGGAGACGAGCCAAACCGAATTCTCTTAGTTACAATTCATCATGTGCTATATCCTATGACAGTGGACGTGATGCATCGAGTATTTTCTACCCATGGATCTGTAGAGAAGATTGTAACATTTCACAAGTCAGCTGGCTGCCAGGCTCTCATACAGTATCAATCACGTCAGAGTGCTGTTACTGCAAAAAACGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTCGATGACTTACAAGTGAACTACAATACCGACCGTACCAGGGACTTCACGAACCCCGATCTTCCTACTGAGCAGAAAGGAAGATCTTCACAACCGGATGCAGGAAACATGTATGGGTCTGCGGCCAGGACAGTTGGACTTTCGCACGCGGCCAATGCTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAGGCATGTATTCTCCTTTTCTTCTTCTTCCAATTTTGATCACTTTTGAAGCTGGAATTTGA 783 0.4393 MAEPSKVIHIRNVGQEISEADLLQLFQSFGVITKLVMLRAKNQALIQMQDIATAVSALQFYENIQPNIRGRNVYIQFSSHQDLAPTDQNQGRGDEPNRILLVTIHHVLYPMTVDVMHRVFSTHGSVEKIVTFHKSAGCQALIQYQSRQSAVTAKNALQGRNVYDGCCQLDIQFSNLDDLQVNYNTDRTRDFTNPDLPTEQKGRSSQPDAGNMYGSAARTVGLSHAANAELSLSLSLSLSLPGMYSPFLLLPILITFEAGI* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0089 260 Pfam RRM-like domain 95 174 IPR021790 -
Lan20g0089 260 PANTHER - 1 216 - -
Lan20g0089 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 60 IPR000504 GO:0003723
Lan20g0089 260 MobiDBLite consensus disorder prediction 186 210 - -
Lan20g0089 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lan20g0089 260 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 216 - -
Lan20g0089 260 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Lan20g0089 260 SMART rrm1_1 101 170 IPR000504 GO:0003723
Lan20g0089 260 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lan20g0089 260 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Lan20g0089 260 Gene3D - 1 96 IPR012677 -
Lan20g0089 260 Gene3D - 97 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0089 Lan-Chr20 523950 528682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0089 K14948 - gmx:100805732 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0756 8 9751040 9757507 Lan20g0089 20 523950 528682 LSH
Lan20g0089 20 523950 528682 Lan4g1818 4 26751211 26757507 LSH