Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0088 ATGTCTCACAGGAAGTTCGAACACCCAAGGCACGGTTCTCTTGGATTTCTTCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGATCAAACTAAGTCACCTAAGCTTACTGCTTTCTTGGGTTACAAGGCGGGTATGACTCACATTGTTCGAGAGGTCGAGAAACCTGGATCGAAGCTTCACAAGAAGGAGACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTGTTGTTGGGGTTGTTGGTTACGTGAAAACTCCACGTGGTCTGCGAACATTAAACACTGTGTGGGCTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTACAAGAACTGGTCTAAGTCCAAGAAGAAGGCCTTTACCAAATACTCGAAGCAGTATGAATCTGAAGATGGGAAGAAAAATATTGAGGCACAACTTGAGAAAATCAAGAAATATGCCACTGTTGTCCGTGTTTTGGCTCACACTCAGATCAGGAAATTGAAGGGGTTGAAGCAGAAGAAGGCCCATATCATGGAGATTCAGGTTAACGGTGGAACTATTCCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCCATCGATGCTGTGTTCCAGAAGGATGAGATGATTGACCTCATTGGAGTGACCAAAGGTAAGGGTTATGAAGGTGTGGTCACCCGTTGGGGTGTTACCCGTCTTCCCCGCAAGACTCACAGGGGTTTGAGGAAGGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTTACTGTTGCTAGGGCTGGTCAGAATGGATACCACCACAGAACTGAGTTGAACAAGAAGATTTACAGGCTTGGAAAAGCAGGACAAGAGTCTCACGAGGCTGTTACCGATTTCGATAGGACCGAGAAAGACATCACACCAATGGGTGGGTTCCCTCATTATGGTATTGTGAAGGACGATTATCTGATGGTGAAGGGCGGCTGTGTTGGTCCTAAGAAAAGGGTTATTACATTGCGCCAATCCTTGCTTAAACAGACTTCGCGTCTTGCACTTGAGGATATCAAGCTCAAGTTTATTGACACATCTTCGAAGTTTGGGCATGGTCGTTTCCAGACAACAGAAGAGAAGCAAAAGTTCTTTGGACGCCTCAAAGCATAG 1170 0.4607 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDQTKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWSKSKKKAFTKYSKQYESEDGKKNIEAQLEKIKKYATVVRVLAHTQIRKLKGLKQKKAHIMEIQVNGGTIPQKVDFAYSFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGQESHEAVTDFDRTEKDITPMGGFPHYGIVKDDYLMVKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTEEKQKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0088 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Lan20g0088 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lan20g0088 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Lan20g0088 389 MobiDBLite consensus disorder prediction 1 36 - -
Lan20g0088 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Lan20g0088 389 Gene3D Translation factors 44 385 - -
Lan20g0088 389 Gene3D - 83 207 - -
Lan20g0088 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lan20g0088 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0088 Lan-Chr20 518088 520846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0088 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0088 K02925 - gmx:100819132 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0088 20 518088 520846 Lan20g0088 20 518088 520846 ECH
Lan8g0757 8 9758398 9761383 Lan20g0088 20 518088 520846 LSH
Lan20g0088 20 518088 520846 Lan4g1819 4 26752439 26760473 LSH