Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0073 ATGACAGAACCTGAGGAAGAAAATCCTTTGGATTTTGATCTAGAAATGGAAAATCCATGGCCTTTAGATAACATGGCCACGTCACCTTTTGTGTTCTCCACTTCCACTTCTTCTCCTGTATGGGTTTTTTCTGATGTGGAAGATGATAGCTTTGTAAAGGTTGCACCTTCACCCTTCTCTGATTGCTACAAGATCTCTTGTGATTCAAATTCAATTGCTGAAAAGCCGGAGGAGAATGATGACAGCAACAAACTTTTGCCACCCCTTGTGGCTATGCCACCATTAGAAAATGTGGACTGGTATTATGTAGTCAAGGAAAAGATGACACAAGCACTTCGCTACTTCAAACAATTGACTGAACAGAATGTTCTGGCTCAGGTTTGGGCACCCGTGAGGAATGGCAATTGTTATGTGCTTACAACTGCTGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGTCTCAATCAGTATAGAACGGTTTCCTTGATGTACATGTTTCCCGTGGATGGGGAGAATGATGGATCCCCGGGGCTTCCTGGTCGTGTTTTTCAGAAGAAATTACCCGAATGGTCTCCTGATGTTCAGTATTATTCTAGTAAAGAATATCCGCGCCGTGATTATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCACTGCATTCATGTGTTGGTGTAGTGGAGTTGATAATGACTTCACAAAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAATCCCTTGAGGCAGTAAATTTGAGGAGTTCGGAAATTCTGGAGCATCCATACATTCAGATTTGTAATGAAGGCCGCCAGAATGCATTAGCAGAGATCTTGGAGATATTGACAGCGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGGTTCCATGTAAGCATCGTAGTGTTTTGGCCAATGGCGGTGGTCTAAAGAAAGTTTGTTCTAGTTTTGATGGTAGTTGCATGGGCCAAGTTTGCATGTCTACAACTGATGTTGCATCCTACATCATAGATCCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTATCCCACAACATGTGCTTCTGCAGTAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGTTGCTTTGCAATTTGTTTACGAAGCTCTCATAGTGAAGAGGATGATTATGTGTTAGAGTTTTTTATGCCTCCTAGGATCACTGACTTTCATGAACAAAAGACACTGTTGGGGTCCATATTGAGAACAATGAAACAACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAGAATGGTTCGATTGAAATTATAGAAGCAACAAATGAAGGAGTTCATTTCACACTTGAGTCAATCCCAATTGATCGATCCACTAAATCACCTCTTATACCTGATTACGCCCCAAATATAGTGGAGGAAATTCCAGAAGATCCATCAGAACAGCAAATAATGATGTACTGTAATGACATAAATGACGGAGAAGATTTTGGTGATAATGCACGGGGAAGCATTGATCAGATGTCCTTGTTAAAGACTAAAACCATAAAGAAACCTTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTGCAACGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTCAACCGTACCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCACAGTGCTGAAGGAGCGTTCGACTTGAATTCTCTCAGCACAAGTCCACTTCCAGATGTTGTTGGTTCCTTTCCTGAGCCTTTTACTCCAAACAAGTTCAGCCAGCAAGCCATATTATGCACCAGGCCATCAGAACCACAAATGAAACAAAATGAATTCGATACTCTTAAAATATCAGAAAGAAGCAGACAGGATGTGATGGAAGATCAATTGCTAGGAACGATACAGAGTCTTGAGAAAGTGATTAATGATAGAGGTGACCCAAAAAGGACGGTAACTAAGAGTAGCTCAAGTGAAGATAGCACAAATCCTACTTCACATGGTTCATGTCATTTTAGTCCCCCAAATGAAAGTCCTCCTGTTAAAGATATATTATTTGCATCAAACAATGAGCAAGGTGTGGCGCTAAGGGAATTGCCAGAGTTGGCATTCCAGCCAACTAATACACTGAACTTCCCAAGTGATTACCCAATTCCCAACATCGCACCAGCCGAACTTCAACAACAACCATTTCGAGAAATGCTAATAGAGGATGCTGGTAGTTCCGAGGACTTCAGAAATTTATGTCCTTCAATAACAGATGCTATTTTGGAGGATCTGATTCCAGAAGCGTGTGGTACTAATCTGCCATGTTCTGATTTGGCTCCAAGGCAAAGCTTGCATACTCTTAATAATGCAGTAACACCTGCAGATAGGAAAGAAATCAAGAATGTGACTATTAAGGCAACATATAAACAATATATCATAAGGTTCCGGGTCTCTTTGACTTGTAGCATTGTGGATTTAAGAGAAGAAGTTGCGAAAAGATTGAAACTAGAGGTCGGTACGTTTGATATCAAGTATCTGGATGATGATAATGAATGGGTTTTGATAGCCTGTGATGCAGACATGCAGGAGTGCATGGATGTTTCATCATCTGGAAGCAACATAGTCAGAGTTTTGGTGCATGATTTAATATCCAATCTTGGAAGTTCCCATGAAAGAGGGGGGGAGTAA 2874 0.4141 MTEPEEENPLDFDLEMENPWPLDNMATSPFVFSTSTSSPVWVFSDVEDDSFVKVAPSPFSDCYKISCDSNSIAEKPEENDDSNKLLPPLVAMPPLENVDWYYVVKEKMTQALRYFKQLTEQNVLAQVWAPVRNGNCYVLTTAGQPFVLDPHSNGLNQYRTVSLMYMFPVDGENDGSPGLPGRVFQKKLPEWSPDVQYYSSKEYPRRDYAQHYNVRGTLALPVFEPSLHSCVGVVELIMTSQKINYAPEVDKICKSLEAVNLRSSEILEHPYIQICNEGRQNALAEILEILTAVCETHNLPLAQTWVPCKHRSVLANGGGLKKVCSSFDGSCMGQVCMSTTDVASYIIDPHLWGFREACVEHHLQQGQGVAGRAFLSHNMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHSEEDDYVLEFFMPPRITDFHEQKTLLGSILRTMKQHFQSLKIAAGVELEENGSIEIIEATNEGVHFTLESIPIDRSTKSPLIPDYAPNIVEEIPEDPSEQQIMMYCNDINDGEDFGDNARGSIDQMSLLKTKTIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRTLSKLKRVIESVHSAEGAFDLNSLSTSPLPDVVGSFPEPFTPNKFSQQAILCTRPSEPQMKQNEFDTLKISERSRQDVMEDQLLGTIQSLEKVINDRGDPKRTVTKSSSSEDSTNPTSHGSCHFSPPNESPPVKDILFASNNEQGVALRELPELAFQPTNTLNFPSDYPIPNIAPAELQQQPFREMLIEDAGSSEDFRNLCPSITDAILEDLIPEACGTNLPCSDLAPRQSLHTLNNAVTPADRKEIKNVTIKATYKQYIIRFRVSLTCSIVDLREEVAKRLKLEVGTFDIKYLDDDNEWVLIACDADMQECMDVSSSGSNIVRVLVHDLISNLGSSHERGGE* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0073 957 Gene3D - 862 943 - -
Lan20g0073 957 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 954 - -
Lan20g0073 957 Pfam PB1 domain 864 943 IPR000270 GO:0005515
Lan20g0073 957 SUPERFAMILY CAD & PB1 domains 863 948 - -
Lan20g0073 957 SMART PB1_new 863 944 IPR000270 GO:0005515
Lan20g0073 957 CDD PB1_NLP 864 943 IPR034891 -
Lan20g0073 957 ProSiteProfiles RWP-RK domain profile. 551 632 IPR003035 -
Lan20g0073 957 ProSiteProfiles PB1 domain profile. 863 944 IPR000270 GO:0005515
Lan20g0073 957 MobiDBLite consensus disorder prediction 706 749 - -
Lan20g0073 957 PANTHER PROTEIN NLP8 7 954 IPR045012 GO:0003700
Lan20g0073 957 Pfam RWP-RK domain 564 612 IPR003035 -
Lan20g0073 957 MobiDBLite consensus disorder prediction 721 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0073 Lan-Chr20 380480 384833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0073 862 957 NLP Transcription Factor Family AT1G64530 53.608 1.22e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan20g0073 PB1 1.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0073 - - gmx:100786118 1443.71