Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0049 ATGGGTAAAGCACCCTGTTGTGAGAAACATGGTGTAAGGAGAGGAGCTTGGACCCCTCAAGAAGACAAAACCTTAGTTGACTACATCAATAACCATGGTCATGGTAGTTGGCGTACACTACCCAACCGTGCAGGTCTTCTACGTTGTGGAAAAAGTTGTAGGCTGAGGTGGATAAATTATCTTCGACCAGACATAAAGCGTGGTCCATTTACTAATGAAGAAGAAACTACTATCATTCAATTTCATGCTATGCTTGGCAATAGATGGGCTGCTATTGCATCTCAGCTACCAGGAAGAACTGACAACGAGATTAAGAACTACTGGAACACCCATCTAAAGAAGCACCTCTCTGGGTCAGATCATACCCGAAGTGCTAAAAAGCCACATGCAAGTCCTGATCCAAAGATTATCAAGTCCGAGTCTCCTTCTACACATCACATGGTACAATGGGAAAGTGCCAGAGTTGAGGCAGAGGCAAGGTTATCAATGGAATCCCCATTGCTTAATTCTTGGTCAACAAGTAATAAAACATACACCGATTGCTATCTTCAACTTTGGCATTCTGAGGTTGGAGACTCATTTCGCACGATTAAGGGAAAGGAAGAAGGAGTAGTGTGTCAAGGACATGTCTCACAAGAAGCATCATCATCAATATCATCAAAGTTGGAGTCATGTTCAGTTGTACAGGTGAAAAACACTAGCACTTTTGCTAAGATGACTCAAGAAGAGGAAGGTAGCTACAAACCAAAACTTGAAGATGATGACACAGGTGGTGCGTTAGAGTCAGGAAACTACGAATTTTTCGATGCTTCTGAATCTGCATTGAAGCACCTGCTAGATGTGCCTGATGGTGATATAGGATTCTGGGACACACTTACAGTTTCCTCAGGGTAA 894 0.4284 MGKAPCCEKHGVRRGAWTPQEDKTLVDYINNHGHGSWRTLPNRAGLLRCGKSCRLRWINYLRPDIKRGPFTNEEETTIIQFHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKHLSGSDHTRSAKKPHASPDPKIIKSESPSTHHMVQWESARVEAEARLSMESPLLNSWSTSNKTYTDCYLQLWHSEVGDSFRTIKGKEEGVVCQGHVSQEASSSISSKLESCSVVQVKNTSTFAKMTQEEEGSYKPKLEDDDTGGALESGNYEFFDASESALKHLLDVPDGDIGFWDTLTVSSG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0049 297 MobiDBLite consensus disorder prediction 116 144 - -
Lan20g0049 297 CDD SANT 69 112 IPR001005 -
Lan20g0049 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0049 297 SMART sant 13 63 IPR001005 -
Lan20g0049 297 SMART sant 66 114 IPR001005 -
Lan20g0049 297 CDD SANT 16 61 IPR001005 -
Lan20g0049 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0049 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g0049 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0049 297 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 290 - -
Lan20g0049 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan20g0049 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 290 - -
Lan20g0049 297 Gene3D - 14 66 - -
Lan20g0049 297 Gene3D - 68 140 - -
Lan20g0049 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan20g0049 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0049 297 MobiDBLite consensus disorder prediction 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0049 Lan-Chr20 263907 266194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0049 1 288 MYB Transcription Factor Family AT3G61250 50.000 1.88e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0049 Myb_DNA-binding 9.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1086 8 14117016 14121686 Lan20g0049 20 263907 266194 LSH
Lan20g0049 20 263907 266194 Lan4g1866 4 27068219 27069702 LSH