Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0048 ATGGGGTTCCAGCCACTAGAAAAGGGAAAACCAAAACATAGGAAGGGATTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACTACATCCTTAAACATGGTCATGATTGTTGGAGTTCTGTCCCTATTAAGGCAGGGTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATTAACTATTTAAGGCCAGGATTAAAGAAAGGGATGTTCACCAAACAGGAGGAGGAGACTATCCTCACCCTTCACAATATGTTGGGCAACAAGTGGTCTCAGATTGCACAGCATTTGCCAGGAAGGACCGACAATGAGATAAAAAACTTGTGGCATTCATATCTTAAAAAGAGAGGGGGCAAATCTCAACAAATGGAACCTCATAAGCAAATTCACTCTGCTACCACAAGCTCAGATACCATGGACTCTTCACTCTCTCTGCAGAGACTTGCAACACAAGGCACACATAATATAAACTTCACCAAAGAGGCTATAAATCAAGGCTTCATGCCAAAACTGTTATTTGCTGAGTGGCTTTCAGTTGATCATGTAAATGATGGCAACTCTTCTAACTCATATGACTCTTTGACCTTGAGGAATGCATTTGATCAAAATCCAACATTTCAAGAAGCTTCAATGCAGCATTGTTTATCAGAAGGGCTCTTTGGTGGAGGAGAGTATCATAATAGTGTAACTCACATTTCAGCCACTGAGATGTTCAATTCACAGCTTAAGTTTGAAAATCAAATAGTGGCAAATGGATTCGTCCAGTGTATAGCTGGGGTTGATCTAAGTAGCAACTTCAGCCTAAGCAATGATGCAATGTATGTATGA 828 0.407 MGFQPLEKGKPKHRKGLWSPEEDNKLRNYILKHGHDCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKKGMFTKQEEETILTLHNMLGNKWSQIAQHLPGRTDNEIKNLWHSYLKKRGGKSQQMEPHKQIHSATTSSDTMDSSLSLQRLATQGTHNINFTKEAINQGFMPKLLFAEWLSVDHVNDGNSSNSYDSLTLRNAFDQNPTFQEASMQHCLSEGLFGGGEYHNSVTHISATEMFNSQLKFENQIVANGFVQCIAGVDLSSNFSLSNDAMYV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0048 275 CDD SANT 71 113 IPR001005 -
Lan20g0048 275 CDD SANT 18 62 IPR001005 -
Lan20g0048 275 MobiDBLite consensus disorder prediction 116 142 - -
Lan20g0048 275 PANTHER MYB DOMAIN PROTEIN 55 1 152 - -
Lan20g0048 275 PANTHER MYB DOMAIN PROTEIN 55 154 269 - -
Lan20g0048 275 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lan20g0048 275 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lan20g0048 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lan20g0048 275 SMART sant 14 64 IPR001005 -
Lan20g0048 275 SMART sant 67 115 IPR001005 -
Lan20g0048 275 PANTHER MYB TRANSCRIPTION FACTOR 1 152 - -
Lan20g0048 275 PANTHER MYB TRANSCRIPTION FACTOR 154 269 - -
Lan20g0048 275 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lan20g0048 275 Gene3D - 70 131 - -
Lan20g0048 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lan20g0048 275 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan20g0048 275 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan20g0048 275 MobiDBLite consensus disorder prediction 124 142 - -
Lan20g0048 275 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0048 Lan-Chr20 260063 262681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0048 8 181 MYB Transcription Factor Family AT3G48920 57.471 5.54e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0048 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0048 K09422 - gmx:778167 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0801 8 9993602 9995733 Lan20g0048 20 260063 262681 LSH
Lan20g0048 20 260063 262681 Lan4g1867 4 27072552 27074767 LSH