Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0045 ATGGCTGTTTTCTTCAACTTTCTACTGTTCCTTCTCTTCTGTACTATTTCAGACCAAACCAATGAAAACCCAGAAAAAATGTCTCTCCTTTCCTTCAAAAACACTCTCCACAACCCCTACCTTCTCTCTTCATGGAACCCTTCAACCTCGCACTGCGACTGGGTTGGTGTTACGTGCAAACTCGACCGAGTCACCTCGCTCTCTCTTCCTTCTCTTCACCTTAAAGCCTCACTCTCTTCTGCTTCTTTACTTTTCTCACTCTCCTCCCTCACTATACTTGACCTCACCGATAACCACTTCTCCGGCCAACTTCCACGCCAACTTGCTGGCTTCACTCACTTGGTAACACTTAAACTCGGTTCCAACTCGTTCACCGGAGTAATCCCACCGGAGATTGGACGCTTGACGAAACTCATCACCCTCGACCTCGCCGGAAACGCCCTTGCCGGGAAGTTACCGGAGACAGTCGGAAACTTGACCCGGCTCCAGTTCCTTGACCTCAGCAGCAACTTCTTCTCAGGTTCTGTACCAAAACCTCTCTTCACCGGAGCACTCTCTTTGATTTCTCTTGATATCTCCAATAACTCGTTTACCGGTAAACTGCCACGAGAAATTGGGAACTTGAGGAATCTCACTGCTCTTGGTGTTGGGAATAACAAGTTTTCAGGGACGTTGCCTAAGGAAATTGGAGAGCTTTCAAAGCTTGAAATTTTTTATGCAAGTTCCTGTTACATTGAAGGTCCATTACCTGAGGAAATGTCAAAGCTAAAATCTTTGACCAACCTTGACCTCTCTTACAACCCTTTGAAGTGTTCAATCCCAAAGTTTATTGGGGAGTTGGAGAATTTGATAATTCTGGACCTTGTTTTTTCTGAGCTTAATGGTTCAGTGCCTTCTGAGTTGGGAAATTGTAGGAACTTGAGGTCTGTGATTCTTTCTTTCAATTCACTTTCAGGGTCACTTCCTGAGGAGCTTTCTCAGCTTCCTATAATAACATTCTCAGCTGAAAAGAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTTGGAAAATGGAGTCATGTTAAGTCTCTATTGCTTTCTGCTAACAGGTTTTATGGTTCAATTCCTCTTGAGCTTGGGAATTGTTCTGTGATGGAGCATCTTAGTTTGAGTAGTAACTTATTGACAGGTCCTATACCTGAGGAGCTTTGTAATGCTGTGTCACTTATGGAGATTGATCTCGATGAAAACTTCCTTTCTGGTACAATAGAGAATGCATTTGTCAACTGCAGGAACCTAACTCAGCTTGGTTTGATGAACAATCAGATTTTGGGTTCCATACCACACTACCTCTCTGGGATTCCGTTAATGGTGCTAGACCTTGACTCCAACAATTTCAGCGGGAACATACCTTCTACTCTGTGGAACTCGTCAACCCTGATGGAATTCTCCGCGGCTAATAACCATTTGGAGGGTTCTCTTCCTACGGAGATTCGGAATGCAGTTACTCTACAGAGGCTTGTTCTAAGTAATAATCAACTCACAGGTACAATACCTAAGGAAATTGGAAGCTTGAAAAGTCTTTCTGTTGTTAATTTGAATGGAAATATGCTTGAAGGGACTATTCCAATTGAGCTTGGTGACTGCATTTCTCTTACCACATTGGACCTTGGAAACAATCAACTCAATGGATCCATTCCTGAGAAACTGGTGGAGCTGAGCCAATTACAGTGCCTGGTTCTTTCTCACAATAATCTCTCCGGCTCTATTCCTTCCAAAAAGAACTCTTCATATTTTCGACAACTCACCATACCTGATTTGAGTTTTGTTCAACACCTTGGTCTACTTGATCTTTCCCATAATACATTATCTGGCCCTATACCTGATGAATTGGGGGAATGTCTGTTGGTTGTAGATCTATTACTCAGCAGCAACATGCTCTCTGGGCCTATTCCTCAATCGCTCCGGCACTTGACAAATCTCACAACTTTGGATTTGTCTGGTAACTTTATATCAGGTTCAATTCCTCCTGAGCTTGGAGACGCAGTCAAACTCCAAGGCTTGTATCTGGGGCAGAATCAGCTCTCAGGTAACATCCCTGAAAGCTTTGGAAAGTTGAGTAGTCTGGTGAAGCTAAATTTGACAGGAAATAAGCTGTTTGGTCCAATTCCAATCAGCTTCGGAAATATGATTCAGTTGACACACTTGGACTTGAGTTCTAATGAGCTCAGCGGCGAGCTTCCGTACTCGCTCTCAGGTGTGCAAAGCCTTGTTGGGCTCTATGTGCAGAAGAACAGGCTTTCTGGACAAGTTGGGCAGCTCTTCTTAAATTCCATGACATGGAGGATTGAAACAATTAACTTGAGTGATAATTGCTTCACTGGGAGCTTGCCAGGATCTTTGGGAAACCTTTCATACTTGACAATTTTGGATCTTCATAGGAATATGTTGACCGGGGAGATTCCTTCAGACCTGGGCAATCTAATGCAGCTGGAGTATTTTGATGTTTCAGGTAACAGGCTATCTGGAATGATTCCGGACAAGTTATGCAGCCTGGGTAATCTGAATTACCTTGATTTGTCTCAAAACAATTTGGAAGGGCCTATCCCCAGAGGTGGTATTTGCCAGAACCTATCCCGGGTTGGATTAGCGGGGAACAAGAATCTTTGTGGGCAGATGTTGGGAATTAAATGTCAGTTCAAAAGCATTGCTAGATCTGCATTTTTTAATCCATGGCGGCTTGCTGGGATTGCCATTACAATCATAGTGGTAAGTCTATGCATTGCTTATGTTCTACATAGATGGTTTAACAGGAGGCAAAGTGATTGCAAGGAACTAAAGGAGCACAAACTAAACAGTTACAGGGATAACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAATTGACTTTGGTGGATATCCTTGAAGCTACGGATAACTTCAGCAAGACCAATATAATTGGTGATGGAGGTTTTGGAACTGTGTACAAGGCCACCTTAACTAATGGAAACAAAGTTGCTGTGAAGAAGCTCAGTGAAGCCAAATCGCAGGGACATCGTGAGTTCTTGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAACCTTGTTGCATTGCTTGGATATTGCTCAATTGGTGAGGAAAAGCTCCTTGTGTATGAATATATGGTGAATGGGAGCTTAGATCTTTGGTTAAGAAACAGGACTGGTGCCCTTGGAATCCTTGACTGGAACAAACGCTACAAAATCGCAACCGGTGCAGCTCGAGGACTAGCATTCCTTCACCATGGTTTCACACCACACATCATTCACAGGGATGTGAAAGCTAGCAACATTTTACTCAATGAGGATTTTGAACCAAAAGTTGCAGATTTTGGACTTGCAAGACTGATCAGTAACTGCGAGACTCATGTCACCACAGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGGAGGTCCACAACAAGAGGAGATGTCTACAGTTTCGGTGTCATTTTACTCGAGCTCGTGACCGGAAAGGAACCGACCGGACCTGATTTTAAAGAGATTGAAGGTGGGAACTTGGTTGGATGGGTTGGTCAAAAGATCAAGAAGGGACAGGCTGCCGATGTTCTTGACCCAACGGTTCTTGACGCAGACTCGAAGCGGATGATGCTTCAGGTGCTGCAGATTGCTTGTGTTTGCCTCTCTGATAATCCTGCAAACAGGCCTATCATGCTTGAAGTACACAAGTTCCTGAAGGGGATCAAAAGAGACTAG 3807 0.4376 MAVFFNFLLFLLFCTISDQTNENPEKMSLLSFKNTLHNPYLLSSWNPSTSHCDWVGVTCKLDRVTSLSLPSLHLKASLSSASLLFSLSSLTILDLTDNHFSGQLPRQLAGFTHLVTLKLGSNSFTGVIPPEIGRLTKLITLDLAGNALAGKLPETVGNLTRLQFLDLSSNFFSGSVPKPLFTGALSLISLDISNNSFTGKLPREIGNLRNLTALGVGNNKFSGTLPKEIGELSKLEIFYASSCYIEGPLPEEMSKLKSLTNLDLSYNPLKCSIPKFIGELENLIILDLVFSELNGSVPSELGNCRNLRSVILSFNSLSGSLPEELSQLPIITFSAEKNQLHGPLPSWLGKWSHVKSLLLSANRFYGSIPLELGNCSVMEHLSLSSNLLTGPIPEELCNAVSLMEIDLDENFLSGTIENAFVNCRNLTQLGLMNNQILGSIPHYLSGIPLMVLDLDSNNFSGNIPSTLWNSSTLMEFSAANNHLEGSLPTEIRNAVTLQRLVLSNNQLTGTIPKEIGSLKSLSVVNLNGNMLEGTIPIELGDCISLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPSKKNSSYFRQLTIPDLSFVQHLGLLDLSHNTLSGPIPDELGECLLVVDLLLSSNMLSGPIPQSLRHLTNLTTLDLSGNFISGSIPPELGDAVKLQGLYLGQNQLSGNIPESFGKLSSLVKLNLTGNKLFGPIPISFGNMIQLTHLDLSSNELSGELPYSLSGVQSLVGLYVQKNRLSGQVGQLFLNSMTWRIETINLSDNCFTGSLPGSLGNLSYLTILDLHRNMLTGEIPSDLGNLMQLEYFDVSGNRLSGMIPDKLCSLGNLNYLDLSQNNLEGPIPRGGICQNLSRVGLAGNKNLCGQMLGIKCQFKSIARSAFFNPWRLAGIAITIIVVSLCIAYVLHRWFNRRQSDCKELKEHKLNSYRDNNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLTNGNKVAVKKLSEAKSQGHREFLAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALGILDWNKRYKIATGAARGLAFLHHGFTPHIIHRDVKASNILLNEDFEPKVADFGLARLISNCETHVTTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKRMMLQVLQIACVCLSDNPANRPIMLEVHKFLKGIKRD* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0045 1268 ProSiteProfiles Protein kinase domain profile. 990 1262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0045 1268 SUPERFAMILY RNI-like 341 586 - -
Lan20g0045 1268 Pfam Leucine Rich Repeat 725 746 IPR001611 GO:0005515
Lan20g0045 1268 Pfam Leucine Rich Repeat 653 672 IPR001611 GO:0005515
Lan20g0045 1268 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Lan20g0045 1268 Gene3D Ribonuclease Inhibitor 332 595 IPR032675 -
Lan20g0045 1268 Gene3D Ribonuclease Inhibitor 82 331 IPR032675 -
Lan20g0045 1268 Gene3D Ribonuclease Inhibitor 15 81 IPR032675 -
Lan20g0045 1268 PRINTS Leucine-rich repeat signature 726 739 - -
Lan20g0045 1268 PRINTS Leucine-rich repeat signature 845 858 - -
Lan20g0045 1268 SUPERFAMILY RNI-like 66 389 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 89 353 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 118 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 334 766 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 777 1267 - -
Lan20g0045 1268 SUPERFAMILY Protein kinase-like (PK-like) 971 1262 IPR011009 -
Lan20g0045 1268 Gene3D Phosphorylase Kinase; domain 1 953 1065 - -
Lan20g0045 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1112 1124 IPR008271 GO:0004672|GO:0006468
Lan20g0045 1268 SMART LRR_typ_2 566 590 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 256 280 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 723 746 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 845 870 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 603 627 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 159 183 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 87 110 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 304 328 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 797 821 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 135 158 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 518 542 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 651 675 IPR003591 -
Lan20g0045 1268 SMART LRR_typ_2 208 232 IPR003591 -
Lan20g0045 1268 ProSiteProfiles Leucine-rich repeat profile. 653 675 IPR001611 GO:0005515
Lan20g0045 1268 Gene3D Ribonuclease Inhibitor 596 897 IPR032675 -
Lan20g0045 1268 Gene3D Transferase(Phosphotransferase) domain 1 1066 1268 - -
Lan20g0045 1268 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Lan20g0045 1268 ProSitePatterns Protein kinases ATP-binding region signature. 996 1019 IPR017441 GO:0005524
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 334 766 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 89 353 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 118 - -
Lan20g0045 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 777 1267 - -
Lan20g0045 1268 SMART serkin_6 990 1262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0045 1268 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515
Lan20g0045 1268 SUPERFAMILY L domain-like 593 884 - -
Lan20g0045 1268 Pfam Protein tyrosine and serine/threonine kinase 993 1262 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0045 Lan-Chr20 240871 244894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0045 25 1265 Receptor kinase-like Gene Family AT5G07280 59.215 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lan20g0045 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0045 - - gmx:100780446 1993.78