Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0044 ATGATTGATATTTCTCAATCAATTTATAGTTCAATGCAATATTCATTTCCCTCCTCTTTGTTAACTCAAAGGAAAATGGAGGGTCATAGTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAAAGCCGTTCCGGGAGCGATAATTTTGATGGCGTGTCTGGTGATGATCAGGATGCTGGTGATGACCAGCCAAAGAGGAAGAGATATCATAGACACACTCCTAACCAAATTCAAGATCTTGAATCTTTCTTCAAAGAGTGTCCTCATCCCGATGAGAAGCAAAGGCTGGATCTTAGTAAGAGACTGGGCCTGGAAAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGGAGAACCCAAATGAAGACCCAATTGGAACGCCATGAGAACATAATGCTTAGACAGGAAAATGAGAAGCTTAGAGCTGAGAACAGTATGATAAAAGATGCCATGTCAAACCCAGTGTGTAACAGTTGTGGCGGTCCAGCCCTTCCTGGACAGATTTCATTCGAGGAGCACCAGATTAGAATTGAAAATGCTCGACTAAAGGATGAATTATCCCGTATAGTTGCCTTAACAAACAAGTTCCTCGGAAAGCCGATCTCATCATTGAGCAGTCCCATGGCTCTTCCAGCCTCAAATTCTGGTCTAGAACTTGGAATCGGAATGAATAGGATTGGTTGTTCAAGCAATGTTGGCACTCCCTTACCAATGGGACTTGATTTGGGAGATGGGGTCTTCAGCACTCCACCTGCAATGCCTGGGGTTAGATCACCAATGGGATTGTTGGGAAATGATGCACAACTCGAGAGATCTATGTTTATAGACCTTGCATTGGCCGCAATGGCAGAATTGATTAAGATGGCTCAGCCGGATAGTCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTGAACCACGATGAGTACGCAAGGTTGTTTTCTCCAAAGCCCGCTGGTTATGCAACTGAAGCTACAAAAGAAACCGGGATAGTAATCATTAACAGTTTAGCCCTTGTTGAAACTTTCATGGACGTGAATCGGTGGGCAGAGATGTTTCCATCTATGATTGCTAGAGTTGTACCCCTTGATGTTATAACTAATGGCATGGGTGGAACCAGAAATGGCGCTTTACTGTTGATGCATTCTGAGGTTCAATTGCTTTCACCACTAGTCCCCGTTCGTCAAGTGCGATTTCTTCGATTTTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTGTTGAGATCGGCCGAGATGCTGCCAATGCGCCTTTCATGACTTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAGGATATGCCCAATGGCTACTCCAAAGTTACTTGGGTTGAGCATTGGCAGTATGATGAGAGTGTTGTGCACCAACTCTATCGCCCATTGCTTAATTCTGGCATTGGTTTTGGTGCTCATAGATGGATCGCTACGCTCCAAAGACAGTGTGAGTGCTTGGCAATCCTCATGTCCTCTTCCATCGCAAGTGATGATCACACAGCTTTGAGCCAGGCTGGCAGGAGAAGCATGCTGAAACTAGCACAACGCATGACCAGTAGCTTCTATTCTGGGGTTTGTGCTTCATCGGCTCGCAAGTGGGAAAGCCTTTCCATGGGGACTTTGGGCGACGACATGAGAGTGATGACGAGGAAGAATATGGATGACCCAGGTGAGCCTCCTGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCACGACAAAGACTGTTTGACTTTCTGCGCAACGAAGGGCTCAGAAGTGAGTGGGATATTTTGTCCAATGGTGGACCGATGCAGGAGATGGTTCACATTGCTAAAGGTCAAGGACATGGAAATTGTGTTTCTCTCCTTCGTGCTGGTTCTGTTAATGCCAATGATAGCAACATGCTGATTCTGCAAGAAACATGGATGGATTCTTCGTGTTCGGTGGTAGTGTACGCACCAGTGGACGTGCAATCCTTGAACGTGGTGATGAGCGGTGGAGATTCAGAATATGTGGCACTCTTGCCTTCAGGGTTTGCCATTGTTCCGGATGGTCAATCCTCGGGCTATGGTGTGGCAAACAGTAGTAACGGGACTATACCAAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGGAGGTGGAAGCTTGCTAACGGTTGGGTTCCAAATTCTGGTGAATAACCTTCCAACAGCAAAGTTGACGATGGAATCTGTTGATACTGTGAAGAACCTCATCTCATGCACCATTCACAAGATCAAAGGTTCTCTCAGAGTTGCATGA 2319 0.464 MIDISQSIYSSMQYSFPSSLLTQRKMEGHSGLMGRMRDDEYESRSGSDNFDGVSGDDQDAGDDQPKRKRYHRHTPNQIQDLESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSMIKDAMSNPVCNSCGGPALPGQISFEEHQIRIENARLKDELSRIVALTNKFLGKPISSLSSPMALPASNSGLELGIGMNRIGCSSNVGTPLPMGLDLGDGVFSTPPAMPGVRSPMGLLGNDAQLERSMFIDLALAAMAELIKMAQPDSPLWIKSLDGEKEVLNHDEYARLFSPKPAGYATEATKETGIVIINSLALVETFMDVNRWAEMFPSMIARVVPLDVITNGMGGTRNGALLLMHSEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSVEIGRDAANAPFMTCRRLPSGCVVQDMPNGYSKVTWVEHWQYDESVVHQLYRPLLNSGIGFGAHRWIATLQRQCECLAILMSSSIASDDHTALSQAGRRSMLKLAQRMTSSFYSGVCASSARKWESLSMGTLGDDMRVMTRKNMDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRNEGLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRAGSVNANDSNMLILQETWMDSSCSVVVYAPVDVQSLNVVMSGGDSEYVALLPSGFAIVPDGQSSGYGVANSSNGTIPKGGGGGGGGGGGGGDDGGGSLLTVGFQILVNNLPTAKLTMESVDTVKNLISCTIHKIKGSLRVA* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0044 772 Pfam Homeodomain 67 122 IPR001356 GO:0003677
Lan20g0044 772 Coils Coil 118 153 - -
Lan20g0044 772 CDD homeodomain 66 124 IPR001356 GO:0003677
Lan20g0044 772 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 25 770 - -
Lan20g0044 772 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Lan20g0044 772 SUPERFAMILY Homeodomain-like 50 124 IPR009057 -
Lan20g0044 772 ProSiteProfiles START domain profile. 267 498 IPR002913 GO:0008289
Lan20g0044 772 SUPERFAMILY Bet v1-like 269 495 - -
Lan20g0044 772 SMART HOX_1 65 128 IPR001356 GO:0003677
Lan20g0044 772 SUPERFAMILY Bet v1-like 524 765 - -
Lan20g0044 772 CDD START_ArGLABRA2_like 271 494 - -
Lan20g0044 772 Pfam START domain 277 495 IPR002913 GO:0008289
Lan20g0044 772 MobiDBLite consensus disorder prediction 35 76 - -
Lan20g0044 772 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Lan20g0044 772 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 770 IPR042160 -
Lan20g0044 772 SMART START_1 276 495 IPR002913 GO:0008289
Lan20g0044 772 Gene3D - 54 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0044 Lan-Chr20 225206 231146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0044 37 769 Homeobox Transcription Factor Family AT3G61150 60.565 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan20g0044 START 1.8e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0044 K09338 - gmx:100785102 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0805 8 10008588 10014720 Lan20g0044 20 225206 231146 LSH