Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0040 ATGGTGAGGGGAAAGATTGATATGAAAAAAATAGAGAATGAAAAAAGGCGTCAAGTGACGTTTTCAAAGCGTAGAAGTGGGCTTCTAAAGAAAGCTTATGAGCTATCTGTTCTTGCTGAAGCAGAAGTAGGTCTAATAATCTTCTCACAGAAAGGAAGGCTTTATGAGTTCTCTTCAACTTCTGACATCAGACAAATTATGGAACGATACCGTAATTATACCAATCATGCTACATCCAATATGTTTGGAGAGGAACATATCCAGCAACTGAAGTTTGATTCCGCAAGCTTGGCAGAGAAGATTGAGCTTCTTGAACTTTCTAAAAGGAAGATGCTGGGACACAGCTTGAGTTGTTGCTCATATGATGAACTCCAAGGAATTGAGGATCAGTTGCAGAGAAGTTTGGAAAGCATCAGGTTGAAAAAGGCTGAAGTATACAAGGAGCATATTGAAAAACTACGTAGCCAGGAGAGAGACTTGCTTAAGGAGAATGAGGAATTAAATGCATTGTGCGTAGAAAAATCATCACAGAAGCAATGGGCACAAGCAGAAGAAACAGCACCTCACACTCCTAGAACCAAGAGTTTGGGTGTGGAGACACAATTATTTATTGGACTGCCATACCATCCTAGCTAG 636 0.4025 MVRGKIDMKKIENEKRRQVTFSKRRSGLLKKAYELSVLAEAEVGLIIFSQKGRLYEFSSTSDIRQIMERYRNYTNHATSNMFGEEHIQQLKFDSASLAEKIELLELSKRKMLGHSLSCCSYDELQGIEDQLQRSLESIRLKKAEVYKEHIEKLRSQERDLLKENEELNALCVEKSSQKQWAQAEETAPHTPRTKSLGVETQLFIGLPYHPS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0040 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan20g0040 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 Coils Coil 143 173 - -
Lan20g0040 211 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Lan20g0040 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Lan20g0040 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan20g0040 211 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Lan20g0040 211 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Lan20g0040 211 PANTHER MADS BOX PROTEIN 1 207 - -
Lan20g0040 211 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0040 Lan-Chr20 203273 207236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0040 1 145 MADS-box Gene Family AT5G62165 61.644 8.57e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan20g0040 K-box 5e-20 No_clan