Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0023 ATGGAGGGATTGGAAGGAATGATAGAGAAGCTTTTAGAAGCAAGGAAGAACAAAGGCAACCGAATTCAACTTGTAGAGTCTGAAATTCGTGATCTTTGCGTCACCGCAAAACAAATCTTCCTCTCCCAACCTAACCTACTCGAATTGGAAGCTCCCATCAACGTTTGTGGAGATATACACGGGCAATATCCAGACTTGTTAAGAGTGTTCGAATATGGTGGTTTTCCTCCAGATTCAAATTACTTATTCCTTGGTGACTATGTTGACAGAGGAAAACAAAGCATAGAAACAATATGTCTCCTCCTTGCTTTCAAAATCAAATACCCGGAAAACTTCTTTCTTCTAAGAGGCAATCATGAATGTGCATCTATCAACAGAATTTATGGATTCTATGATGAGTGTAAGAGGAGATTCAGTGTGAGACTATGGAAGATATTTACAGATTGCTTCAATTGTTTACCAGTATCAGCAGTGATTGATGATAAGATACTATGCATGCATGGAGGGCTTTCTCCTGATATGGAGAGTTTGAATCAGATCAAAGCGATTGAAAGACCAGTTGATATTCCAGATCAGGGTCTCTTATGTGACCTCCTTTGGTCTGATCCTGACACAGAAACCAGAGGTTGGGGTGAGAATGATAGAGGTGTTTCATACACTTTTGGACCTGATAAGGTTTCTGATTTCCTCAAGAAACACGACCTCGATCTTATATGTAGGGCTCACCAGGTTGTTGAAGATGGATACCAATTCTTTGCAGATAGGCAACTAGTTACTATATTTTCAGCTCCAAACTATTGTGGAGAGTTCAATAATGCAGGTGCACTAATGTGTGTGGATGAAACTTTACTATGTTCATTTCAGATTCTCAAACCCTTAAGACGAAAAATTACATAG 897 0.3935 MEGLEGMIEKLLEARKNKGNRIQLVESEIRDLCVTAKQIFLSQPNLLELEAPINVCGDIHGQYPDLLRVFEYGGFPPDSNYLFLGDYVDRGKQSIETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVSAVIDDKILCMHGGLSPDMESLNQIKAIERPVDIPDQGLLCDLLWSDPDTETRGWGENDRGVSYTFGPDKVSDFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQILKPLRRKIT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0023 298 CDD MPP_PP1_PPKL 4 292 - -
Lan20g0023 298 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Lan20g0023 298 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Lan20g0023 298 Gene3D - 2 297 IPR029052 -
Lan20g0023 298 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 296 - -
Lan20g0023 298 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 296 - -
Lan20g0023 298 SUPERFAMILY Metallo-dependent phosphatases 21 294 IPR029052 -
Lan20g0023 298 SMART pp2a_7 24 294 IPR006186 GO:0016787
Lan20g0023 298 Coils Coil 8 28 - -
Lan20g0023 298 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Lan20g0023 298 Pfam Serine-threonine protein phosphatase N-terminal domain 5 50 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0023 Lan-Chr20 109512 111216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0023 31 240 Calmodulin-binding Proteins AT5G63870 31.873 2.18e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0023 K06269 - gmx:100804212 575.089