Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0016 ATGGAACAGCAGGTTGTTGAGTCAGATGAAATGGAACCACAATCTGAAGAATTTAGTGAGAAATCAGAACAAAAGAAAGTGAAAATAGATGCTCTGGAATCCAAAATTGAGGAAGAAGGCGTGACTCTTGACGTATCAGGGAAGAGCTTGGAGTTCCCGTCATCATCGGAAAATAAAAAGGATTCAGCGGTGGAGAGTTTGTATCTATACAAGAATGTTTATAGTTTGATACCGAAGTCGGTGGGTGAACACGTTCGTTTGAAAACCCTAAAGTTCTTCGGGAACGAGATTAATTTATTTGCACCAGGGTTTGGGGACCTGAATGGCTTGGAATGCTTGCAGATGAAGATTTCTTCTCCTGGGATTGGTGGATTACCATTACATAAGATGAAGGGTTTGAAAGAGCTTCAGCTTTCCAAAACCCCTCCAAGGCCTTCTGCTTTTCCTATTTTGACTCACATTGCTACTCTCAAACGCTTGACCAAGCTTTCTATTTGTCACTTTTCTATAAGATTTCTTCCTCCGGAAATTGGATGCTTAAAGAATCTGGAGTATCTGGATCTTTCATTCAATAAGATTAAGAGGTTGCCCGAAGAGGTTACTTTCTTGAGTGGATTGATATCCATGAAAGTTGCCAACAATAAATTGGTGGAACTACCATCAGCAATGGCATCTTTGTCCATGTTGGAGAGTTTGGACCTGTCAAATAATAGGCTGACTTCGTTGGGATCCATCGAACTTTGCTCAATGCATAGACTGCGGAATTTAAATCTTCAGTACAATAAGCTGCTAAGCGTCTTTCAAATACCTTCATGGATATGCTGTAACATGGAAGGAAATGATGGAGGTGGATGCAACGAGGATTTTAGCAGTTATGTTGAAATGGATGTCTATGAAAACAGTTCACAGGAAAATGATATTCATGGTCCTCATAACACCTCATCAAGTTTATTAACTAGCTCCTCATCTAGCAGTAGATGTTTTGCAGCCCGGAAGTCAGGTAAGCGGTGGAAACGCCAATATTACTTACAGCAGAAAGCTCGTCAAGCATGCTTGAACAACAGCAGGAAGTGGAAAGGTGTAGATCATGATCAGTTGTTGAGCAAAAAGATTCACAGAATTTCTGAACCAGAAAATGCAGACAGTCTTGCTTCTGAAAGTTGTAGAGAAGCTGTATCAGACAAAGCAAACCTGGATGAAAATAAAAAAAGAATATTTTCTGAAGAATCAGTGAGCAACAATTTAATTGATGTTGTCAATGATGATGAAGTAATTATTGAAAAGCAGTTTTGTGCAGAAAGTTGCTGCACCACTGAAAGAAAAAATGAAAAAGATACATCCTTATGCTCCTTAGAGAATATTCCCACTGAACTGGATGAAGCATCCTGTTCAGAAATTCAGAAGTGTATTTCTAAATCAAAGAGGCATTCAGATCGAGATATTGATAATCCCAAACCGTGCAAATCTAGGAAACCGATTGACAATAGCTCATTATTGTCTAGCCAGTACAGTAAGATGTCATTCTGTGGCATTGAGGACCATCTATCAGATGGCTTTTATGATGCAGGACGTGATCGGCCCTTTATGCCACTTGAGAATTATGAGCGTAAACAGTGTTTTGATTCCCGTGAAGTTATTTTGTTGGACAGAAAAAAAGATGAAGTGTTGGATGCTGTGTTGCTCTCTGCTCGGGCATTGGTCTATAATTTGAAGAACCAGGCTGCAGTTTATAATTTGCAGGCAGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTATTGTCGAAATGACAAGGAAAGCGGTTTCTGGTTCAAACTATAATAAGCCTTTTGTCTGCACATGCTCAGCTGGGAGCAGCACTGATATAAGTGCTTCAGACAAACCAGTTGTAAACACCACGGAAGATATCACTCTTCCCATGATTTCTGAAAAATCTCTTCATTCTATAAAGAAAAGGCGAAGTTCAATCGTAGTTCCAATTGGGTCTGTGCAGTTTGGTGTATGTAGACATAGAGCTTTGCTTTTGAAGTATTTATGTGATCACATGGAGCCACCGGTACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTCGCCACATGCCTGGAACATCATTTTAATTAAGAGAGATGGCATATGGGTTCGAATGCTAGTTGATGCATGTCGGCCTCATGATATAAGAGAAGAGAAAGATCCTGAGTACTTTTGCAGGTACATACCTCTTAGTCGAACAGAAATCTCACTTTCATGTAGAGGAACTCCTGGACCTGATCATTCCTTTCCATCTCTCTCTTCTTGTAATGAGCTTGAGAAAAAAACCTCTACTACTTTAGTTCAGTGCAAACTTGGACCAATTGAGGCTGCAGCAAAGGTGCGCACTTTGGAAGTGCAGGCGAGTTCATCTGAAAAAATTAAAAACTTCGAATATAATTGTTTGGGAGAAGTTAGAATTCTAGGTGCTTTAAAACATCCCTGCATAGTGGAAATGTACGGACACCAAATATCATGCCAATGGACTCTCTCATCTGATGGTAATCCTGAGCATCGTGTATTGAGATCTTCAATATTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTAAATAAGCTATCAGAAGCTGGTGAAAAGCATGTCCCTGTGGACTTGGTGTTTTGTATTGCCAAAGATGTGGCATGCGCTTTGTTGGAACTGCATTCGAAGCACATAATACACCGTGACATAAAAAGTGAAAACATTCTTTTTGATTTGGCCAAGAGAGACGATGGAATTCCCACTGTTAAGCTCTGTGATTTCGATAGTGCGGTGCCACTAAGATCACCTTTGCATGCATGCTGCATTGCTCATGTGGGAACACCTCCTCCATGTGTATGTGTTGGTACACCTCGGTGGATGGCTCCAGAGGTTATGCGGACGATGCATGAAAAAAACACTTACGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTTTGGAGATGCTCACTCTACAAATTCCATATTCTGGAATCTCTGATTCGGATGTCCATGATAGTCTGCAGATTGGTAAACGACCAAAATTAACTGATGAGCTAGAAGTATTGTGTTCAGTGAATGAACCTACAATGATTCAATCTGGTAAAGTGGAAGAAACTGATGCTGAGGTAGACATGTTGAAATTTCTTGTTAATTTGTTTGGTATGTGTGTCGAAGAAGATCCAACAGAACGTCCTACAGCTCAAGAAATCCATGAAATGCTGCTTAAACACAGCCCCCCTTCAAGAACAAGATGTTAA 3306 0.4032 MEQQVVESDEMEPQSEEFSEKSEQKKVKIDALESKIEEEGVTLDVSGKSLEFPSSSENKKDSAVESLYLYKNVYSLIPKSVGEHVRLKTLKFFGNEINLFAPGFGDLNGLECLQMKISSPGIGGLPLHKMKGLKELQLSKTPPRPSAFPILTHIATLKRLTKLSICHFSIRFLPPEIGCLKNLEYLDLSFNKIKRLPEEVTFLSGLISMKVANNKLVELPSAMASLSMLESLDLSNNRLTSLGSIELCSMHRLRNLNLQYNKLLSVFQIPSWICCNMEGNDGGGCNEDFSSYVEMDVYENSSQENDIHGPHNTSSSLLTSSSSSSRCFAARKSGKRWKRQYYLQQKARQACLNNSRKWKGVDHDQLLSKKIHRISEPENADSLASESCREAVSDKANLDENKKRIFSEESVSNNLIDVVNDDEVIIEKQFCAESCCTTERKNEKDTSLCSLENIPTELDEASCSEIQKCISKSKRHSDRDIDNPKPCKSRKPIDNSSLLSSQYSKMSFCGIEDHLSDGFYDAGRDRPFMPLENYERKQCFDSREVILLDRKKDEVLDAVLLSARALVYNLKNQAAVYNLQAASLLALFVSDHFGGSDRGAIVEMTRKAVSGSNYNKPFVCTCSAGSSTDISASDKPVVNTTEDITLPMISEKSLHSIKKRRSSIVVPIGSVQFGVCRHRALLLKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRDGIWVRMLVDACRPHDIREEKDPEYFCRYIPLSRTEISLSCRGTPGPDHSFPSLSSCNELEKKTSTTLVQCKLGPIEAAAKVRTLEVQASSSEKIKNFEYNCLGEVRILGALKHPCIVEMYGHQISCQWTLSSDGNPEHRVLRSSIFMEYVEGGSLKNYLNKLSEAGEKHVPVDLVFCIAKDVACALLELHSKHIIHRDIKSENILFDLAKRDDGIPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMHEKNTYGLEADIWSFGCLLLEMLTLQIPYSGISDSDVHDSLQIGKRPKLTDELEVLCSVNEPTMIQSGKVEETDAEVDMLKFLVNLFGMCVEEDPTERPTAQEIHEMLLKHSPPSRTRC* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0016 1101 SMART LRR_typ_2 250 276 IPR003591 -
Lan20g0016 1101 SMART LRR_typ_2 180 203 IPR003591 -
Lan20g0016 1101 SMART LRR_typ_2 226 249 IPR003591 -
Lan20g0016 1101 SMART LRR_bac_2 203 222 - -
Lan20g0016 1101 SMART LRR_bac_2 180 199 - -
Lan20g0016 1101 SMART LRR_bac_2 226 245 - -
Lan20g0016 1101 SMART serkin_6 775 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0016 1101 MobiDBLite consensus disorder prediction 475 494 - -
Lan20g0016 1101 MobiDBLite consensus disorder prediction 475 489 - -
Lan20g0016 1101 PRINTS Leucine-rich repeat signature 183 196 - -
Lan20g0016 1101 PRINTS Leucine-rich repeat signature 226 239 - -
Lan20g0016 1101 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1093 - -
Lan20g0016 1101 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Lan20g0016 1101 PANTHER BNAC08G43810D PROTEIN 65 1093 - -
Lan20g0016 1101 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
Lan20g0016 1101 Gene3D Transferase(Phosphotransferase) domain 1 772 1098 - -
Lan20g0016 1101 Pfam Protein kinase domain 809 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0016 1101 Gene3D Ribonuclease Inhibitor 22 305 IPR032675 -
Lan20g0016 1101 SMART LRR_sd22_2 226 247 - -
Lan20g0016 1101 SMART LRR_sd22_2 180 202 - -
Lan20g0016 1101 MobiDBLite consensus disorder prediction 1 26 - -
Lan20g0016 1101 Pfam Ethylene-responsive protein kinase Le-CTR1 649 717 - -
Lan20g0016 1101 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Lan20g0016 1101 SUPERFAMILY Protein kinase-like (PK-like) 793 1091 IPR011009 -
Lan20g0016 1101 Coils Coil 15 35 - -
Lan20g0016 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 912 924 IPR008271 GO:0004672|GO:0006468
Lan20g0016 1101 SUPERFAMILY RNI-like 59 279 - -
Lan20g0016 1101 ProSiteProfiles Protein kinase domain profile. 779 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0016 Lan-Chr20 66800 74433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0016 791 1086 MAP Kinase Kinase Kinase AT4G08500 30.068 3.08e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Lan20g0016 Pkinase 2.9e-38 CL0016