Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2082 ATGGGTGACAAAGATGATGCTTTGAGTTTGGATTTGGATTTGAGTTTAAGTTTGGGATGTGCTCAAAATGCAAATAATAATAACAATAATAATAATAATCAAACTCCTTTGAAGGTTATGAATCTCATGCATAACCCTCCAAATCAATCTCTTCAAAATCAAAGACTTTCTTTTAATACTTTGTTTCATTTTCCTGATCGAACCTCCGAGCCGCCCTCGTTCCTCCGTGGAATAGCCGTGAATGCAGCTCCGCCGCCGTCATTGGCGGTGGCGTCTGCCGGCGACGATGAGAATGGGGTATCGTCGCCGAACAGCACGGTATCGAGTGTCAGCGGGAAGAGGCTTGAAAGGGAAGCTAATGGAGACGACACCGACGCCGCCGAGAGGGCCTCATGTACTCGTGGTGGTAGCGATGATGATGGTGGTGATGGTGATGGCGATGGCGAAAATTCGAAGAAGAAATTGAGGTTGTCAAAGGAACAAGCCTTGGTACTAGAAGATACATTCAAGGAGCACAATACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAATCAGTTGAATCTGCGGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAAAGATGCTGTGAGCATCTATCTGAAGAGAACAGGAGATTGCAAAAGGAAGTGCAAGAGCTTAGGACATTGAAGTTATCCTCACACCTCTACATGCACATGAACCCTCCTACCACTCTTACGATGTGCCCATCATGCCAGCGAGTTGGCGTCTCATCTACATCCTCCTCATCACCAGCCACCATGCCCTCTGCTCCGGCTCTAGCTAACTGCAACCGACTGGGCCTTAACATCCAGCGGCCAGTGCCGATCAACCATTGGGTGCCGATGCAAATCCAACACCGACCATTTGACATCCCAACCTCCCGGCCATAA 966 0.4772 MGDKDDALSLDLDLSLSLGCAQNANNNNNNNNNQTPLKVMNLMHNPPNQSLQNQRLSFNTLFHFPDRTSEPPSFLRGIAVNAAPPPSLAVASAGDDENGVSSPNSTVSSVSGKRLEREANGDDTDAAERASCTRGGSDDDGGDGDGDGENSKKKLRLSKEQALVLEDTFKEHNTLNPKQKQALANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEHLSEENRRLQKEVQELRTLKLSSHLYMHMNPPTTLTMCPSCQRVGVSSTSSSSPATMPSAPALANCNRLGLNIQRPVPINHWVPMQIQHRPFDIPTSRP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2082 321 SMART HOX_1 150 212 IPR001356 GO:0003677
Lan1g2082 321 Coils Coil 214 244 - -
Lan1g2082 321 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677
Lan1g2082 321 Pfam Homeobox associated leucine zipper 208 241 IPR003106 GO:0006355|GO:0043565
Lan1g2082 321 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981|GO:0006355
Lan1g2082 321 Pfam HD-ZIP protein N terminus 1 118 IPR006712 GO:0005634
Lan1g2082 321 Gene3D - 140 212 - -
Lan1g2082 321 PANTHER - 9 309 - -
Lan1g2082 321 SUPERFAMILY Homeodomain-like 136 209 IPR009057 -
Lan1g2082 321 MobiDBLite consensus disorder prediction 89 156 - -
Lan1g2082 321 MobiDBLite consensus disorder prediction 115 156 - -
Lan1g2082 321 Pfam Homeodomain 152 206 IPR001356 GO:0003677
Lan1g2082 321 CDD homeodomain 152 209 IPR001356 GO:0003677
Lan1g2082 321 CDD bZIP 201 239 - -
Lan1g2082 321 SMART halz 208 251 IPR003106 GO:0006355|GO:0043565
Lan1g2082 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 309 - -
Lan1g2082 321 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2082 Lan-Chr1 36049791 36052628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g2082 44 265 Homeobox Transcription Factor Family AT3G60390 66.094 2.99e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan1g2082 HD-ZIP_N 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2082 K09338 - gmx:100798480 367.466