Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2062 ATGAATTGCTTTTACTACTTTAAAGACAAATCAAAGAGCAATAGGCAAATATCAGCACCTGAACTGAAAGAGGGTCACAAGAAATTATCTCAGTTTTCAGGTGCTGAACCTGAAAGAGTCACCAAGTCTTCATGCTCATCGTCGACTTCGTATCGCGGTATACCCGAACTGTACGAGGAGAAGGCTCGCAATTTGCGGGCCTTCTCCTTCACGGAACTCAAGCATGCAACAAATGATTTCAGCAGGCTTCTTAAGATCGGAGAAGGCGGATTCGGGAGTGTATATAAAGGTTCAATCAAGCATGTTGAAGGGAATGGTGATCCTGTTTTAGTTGCTATCAAAAGGCTTAACAAGGATGCATCACAGGGTCATAAGCAATGGTTAGCTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCGAATCTTGTCAAGCTTATCGGATACTGTGCTTCGGATGACGAAAGAGGGATCCAGAGACTACTCGTGTACGAATACATGCCGAATAAAAGCTTAGAATCTCATCTTTTCGAGAAAGCATATGACCCTCTTCCTTGGAAAACAAGACTTGAAATTGCACTTGGAGCAGCTCAAGGGTTAGCTTATCTGCATGAAGAATTAGAAGTTCAGGTGATATATCGAGATTTTAAATCGTCGAATGTATTACTCGATGCAAATTTAAAGCCAAAACTTTCTGATTTCGGACTCGCCCGGGAGGGTCCAGCTGCAGGGGATACTCATGTTTCCACTGCTGTGATGGGGACATATGGTTATGCTGCTCCGGATTACGTCGAGACAGGCCATCTCACTGCGAAGAGCGATGTGTGGAGTTACGGCGTCGTGCTATATGAAATCCTTACGGGCAGGCGATCATTGGAAAGAAATAGGCCTAAAATGGAGCAAAAACTATTGGAGTGGATAAAACAGTATCCTCCTGACAGCAAAAGGTTCGAATCGATAATGGATTCGGCATTTGTAGGACAATATTCGATTAGTGGAGCACGAAAGGTGGCGAAGCTTGCGGATAGTTGTCTACGTAAGAGTGCGAAAGACCGGCCGACAATGAGGCAAGTGGTTGAGAGATTGAAGCAGATAATCCAAGATTATGATGAAGAAAACACTGCAGAGAAAAATGTTGATGCAGCAGAAAATGATGTAGTTGAGCATGAAGAAAAGATGAATGAATCAGATTCTTCAGTATTATGGAAAAAGAGAATGGAACATCTTGAAAAACTTGGTGAACATGTTGAGAGTGCTAGTAGAAGAAGATTTATGATTCTACAAAGAATCAATGTGCCTTAA 1299 0.4257 MNCFYYFKDKSKSNRQISAPELKEGHKKLSQFSGAEPERVTKSSCSSSTSYRGIPELYEEKARNLRAFSFTELKHATNDFSRLLKIGEGGFGSVYKGSIKHVEGNGDPVLVAIKRLNKDASQGHKQWLAEVQFLGVVEHPNLVKLIGYCASDDERGIQRLLVYEYMPNKSLESHLFEKAYDPLPWKTRLEIALGAAQGLAYLHEELEVQVIYRDFKSSNVLLDANLKPKLSDFGLAREGPAAGDTHVSTAVMGTYGYAAPDYVETGHLTAKSDVWSYGVVLYEILTGRRSLERNRPKMEQKLLEWIKQYPPDSKRFESIMDSAFVGQYSISGARKVAKLADSCLRKSAKDRPTMRQVVERLKQIIQDYDEENTAEKNVDAAENDVVEHEEKMNESDSSVLWKKRMEHLEKLGEHVESASRRRFMILQRINVP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2062 432 ProSitePatterns Protein kinases ATP-binding region signature. 86 114 IPR017441 GO:0005524
Lan1g2062 432 Gene3D Transferase(Phosphotransferase) domain 1 166 391 - -
Lan1g2062 432 Gene3D Phosphorylase Kinase; domain 1 54 165 - -
Lan1g2062 432 Coils Coil 358 398 - -
Lan1g2062 432 MobiDBLite consensus disorder prediction 36 50 - -
Lan1g2062 432 PANTHER OS01G0588500 PROTEIN-RELATED 30 420 - -
Lan1g2062 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lan1g2062 432 Pfam Protein kinase domain 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g2062 432 ProSiteProfiles Protein kinase domain profile. 80 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g2062 432 PANTHER OS07G0495150 PROTEIN 30 420 - -
Lan1g2062 432 CDD STKc_IRAK 86 364 - -
Lan1g2062 432 SUPERFAMILY Protein kinase-like (PK-like) 63 362 IPR011009 -
Lan1g2062 432 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2062 Lan-Chr1 35803867 35806481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g2062 1 361 Glycoside Hydrolase AT3G07070 42.779 9.09e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan1g2062 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2062 - - cam:101511022 673.315