Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2059 ATGTCTTCTCCTCCTCCATTATCATTAAACGTCGTCGGATCAGACACCTTTATCCCACTTTCATCTTCCACTTCACGCCGTTCATCATCTTCGTTAAAGAACCTCAGCCCAACCATTCTCATCATTGTAACCGTCCTCGCCGTTACCGTTATCGTTTCCTTATCAATCTGCTTCCTAATCCGTCACCTTAACCGCCGCTGCCTCCGCCGCCTCTCCCATTCCTCCTCCGCCGTCCCCTCATCCGCCGCTGCAACTCCGATCTTCACATCCAGCCGCCGCATTTCGCCGGAAATCACTCCATCCTCTATAATTGACTCACTCCCTTTGTTCACGTTTTCCTCCGTCACTCGCCGCTCCGCCACCGGCGCCGCTGACTGCGCCGTGTGCTTGTCGAAGTTTCAAGACCACGACCTCCTCCGCCTCCTTCCGCTCTGCTGCCACGCGTTCCACGCGGAATGCATTGACACTTGGCTACAGTCCAACCTCTCCTGTCCGCTCTGCCGATCCGCCATTGTCGCCGCCGATAACGACCTCGCCAAGATTCTCCGGTCGTCATCCTCCGCCGGAAGCGACAGTTTTCGAGTTGAGATAGGGAATGTGAGCCGCAGAGGAACCGCAGCAGCAACGGCACCGGAGGATTCCGTTTCCTCCACCGCCGATGATGCTCGTAGTGGCGGCGCGGGAACGAGGTCATATTCCATTGGATCGTTTGAGTACTTAGTGAATGAGGAATCAGAGGTTCCTTTCAGTAATGCTCACCGGAGAAGCGTTTCAGATCAAAAGGATATTCCGATTCCGGCGGAGTATTCGGTGACTCAGAATGAAGCATTTCTTGCCGGAGATGTTGCCGGAGTTAGAAACTGGCTTAAGGATTACGTGGATAGAATTTCAGCTTCAATATCGTCGAGAACGGTGTCGTTTAGAAGCTCTGGAAGATTTGGCGGGAGTAGTAGAAGAAGCGACGTCGTTCCAGTAAGTGTTGATTATGACATTGAAGGTAACAGAATTGGTGAAGAGATTAGCGAAATGTTTCGTTGGATTTCAGGGGTATGA 1053 0.5242 MSSPPPLSLNVVGSDTFIPLSSSTSRRSSSSLKNLSPTILIIVTVLAVTVIVSLSICFLIRHLNRRCLRRLSHSSSAVPSSAAATPIFTSSRRISPEITPSSIIDSLPLFTFSSVTRRSATGAADCAVCLSKFQDHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVAADNDLAKILRSSSSAGSDSFRVEIGNVSRRGTAAATAPEDSVSSTADDARSGGAGTRSYSIGSFEYLVNEESEVPFSNAHRRSVSDQKDIPIPAEYSVTQNEAFLAGDVAGVRNWLKDYVDRISASISSRTVSFRSSGRFGGSSRRSDVVPVSVDYDIEGNRIGEEISEMFRWISGV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2059 350 Pfam Ring finger domain 125 168 IPR001841 -
Lan1g2059 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 334 - -
Lan1g2059 350 MobiDBLite consensus disorder prediction 210 229 - -
Lan1g2059 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 334 - -
Lan1g2059 350 MobiDBLite consensus disorder prediction 204 229 - -
Lan1g2059 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 177 IPR013083 -
Lan1g2059 350 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lan1g2059 350 SUPERFAMILY RING/U-box 104 174 - -
Lan1g2059 350 CDD RING-H2_PA-TM-RING 125 168 - -
Lan1g2059 350 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2059 Lan-Chr1 35769629 35770863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g2059 21 168 C3H Transcription Factor Family AT2G34990 36.601 2.68e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2059 K10663 - gmx:100776516 385.185