Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2008 ATGTCGCTTAGACCAAATGAGAGAACCGAAGGGCGACGCAACCGCTACAAGGTCGCCGTCGACGCCGAAGAAGGCCGCCGTAGAAGAGAGGATAACATGGTTGAGATCCGCAAGAACAAGCGCGAAGAGAGCCTTCAGAAGAAGCGTCGCGAAGGCTTCGCAGCTCAACAACAGTTCACTACTCCTATTAACAACTTCGATAAAAAGTTAGAGACTCTTCCGGCACTGGTTGCTGGTCTTTGGTCAGATGATAATTCTACGCAATTGGAAGCCACAACACAATTTCGGAAACTGCTTTCAATTGAGCGGAGTCCTCCAATTGAGGAAGTTATTCAATCGGGTGTTGTGCCACGTTTTGTTCAGTTTCTCAGTAGGGAGGATTTCCCTCAAGTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATTGCATCTGGAACTTCTGAGAATACTAAGGTGGTGATTGATCATGGGGCAATTCCTACATTTGTGAAGCTACTCAGTTCACCTAGTGAGGATGTTCGGGAGCAGGCAGTGTGGGCACTGGGAAATGTTGCTGGTGACTCCTCTCATTGTCGGGATCTAGTTCTCAGCCAGGGTGCTCTGATCCCACTATTGGCCCAGTTGAATGAGCATACAAAACTTTCAATGCTGCGAAATGCCACATGGACACTATCAAACTTTTGCAGGGGCAAGCCACAACCTCCGTTTGAGCAAGTGAGGTCAGCACTTCCAGCCCTTGAACGTTTGATTTTTTCCAATGATGATGAAGTTCTGACAGATGCTTGCTGGGCTCTATCATATCTTTCTGATGGCACAAATGATAAAATCCAAGCAGTTATTGAGGCGGGCGTATGTACCCGATTGGTGCAGCTCCTTCTGCACCCTTCTCCCTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATGTGCAGACTCAGTGTATTATCAATCATGGAGCACTCCCAAGCCTTTTGAGCCTGTTGACTCATAATCATAAAAAAAGCATCAAGAAGGAAGCTTGCTGGGCTATATCAAATATCACAGCTGGAATCAAGGAACAAATACAGGCTGTTATTGAAGCTGGCCTTATTGGTCCCCTTGTCGTTCTTCTTCAAAATGCTGAGTTTGACATCAAAAAAGAAGCTGCATGGGCAATCTCAAATGCCACATCTGGTGGAAGCAATGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGAGCTACTTATTTGCCCCGACCCAAGAATAATCACAGTCTGTTTGGAAGGCTTGGAGAATATTCTGAAGGTGGGAGAAGCAGAGAAGTACCTAGGTAACACTGGAAATGTTAACTTGTATGCTCAAATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAATCTGCAAAGTCACGACAACAATGAAATATATGAGAAGGCTGTTAAAATGCTTGAAACATACTGGTTGGAAGATGAAGATGATGAGACACTACCTCCCGGTGATGGTGCTCAGCCTGGTTTCAATTTTGGAAGCAATGAGCTCCCAGTGCCATCTGGTGGATTCAACTTTCGTTGA 1590 0.4579 MSLRPNERTEGRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLQKKRREGFAAQQQFTTPINNFDKKLETLPALVAGLWSDDNSTQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLSREDFPQVQFEAAWALTNIASGTSENTKVVIDHGAIPTFVKLLSSPSEDVREQAVWALGNVAGDSSHCRDLVLSQGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFEQVRSALPALERLIFSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCTRLVQLLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINHGALPSLLSLLTHNHKKSIKKEACWAISNITAGIKEQIQAVIEAGLIGPLVVLLQNAEFDIKKEAAWAISNATSGGSNEQIKYLVSQGCIKPLCELLICPDPRIITVCLEGLENILKVGEAEKYLGNTGNVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKMLETYWLEDEDDETLPPGDGAQPGFNFGSNELPVPSGGFNFR* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2008 529 Pfam Atypical Arm repeat 455 504 IPR032413 -
Lan1g2008 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lan1g2008 529 MobiDBLite consensus disorder prediction 1 30 - -
Lan1g2008 529 Pfam Importin beta binding domain 12 93 IPR002652 GO:0006606|GO:0061608
Lan1g2008 529 Gene3D - 71 494 IPR011989 -
Lan1g2008 529 Gene3D - 11 50 IPR036975 GO:0006606
Lan1g2008 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 272 312 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 400 440 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 146 186 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 314 355 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 357 397 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 103 144 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 231 270 IPR000225 GO:0005515
Lan1g2008 529 SMART arm_5 188 229 IPR000225 GO:0005515
Lan1g2008 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 241 283 IPR000225 GO:0005515
Lan1g2008 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lan1g2008 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 368 IPR000225 GO:0005515
Lan1g2008 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 520 - -
Lan1g2008 529 PANTHER IMPORTIN ALPHA 2 520 - -
Lan1g2008 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Lan1g2008 529 SUPERFAMILY ARM repeat 5 499 IPR016024 -
Lan1g2008 529 MobiDBLite consensus disorder prediction 497 529 - -
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 400 438 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 188 229 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 314 355 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 359 396 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 146 185 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 240 269 IPR000225 GO:0005515
Lan1g2008 529 Pfam Armadillo/beta-catenin-like repeat 104 144 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2008 Lan-Chr1 35239748 35244461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g2008 129 389 U-box Gene Family AT3G46510 26.894 4.15e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2008 K15042 - gmx:100808498 949.503