Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2007 ATGGAGTTTGATCACAGTGAAAAAGGATCAGAAGCTGAAGACACAAACCCTAACTCTGGTAGTGAACACAAGAAAACATGCGCTGATTGTGGCACCTCTAAGACCCCTCTCTGGCGAGGTGGTCCTGCAGGTCCTAAGTCACTGTGCAATGCTTGTGGGATCAGAAGTAGGAAGAAGAAAAGAGCGATATTGGGAGTAAACAAAGGAAACAACAATGATGAAATAAGAAAAGGGAAAAGAAGTAACAGTAACAATAAGATTGGGGAAAGTTTGAAACAAAGGTTATGGGCTTTGGGAAAAGAAGTAATGATGCAGAGATCTACAATGAGGAAGAAATTGGGTGAAGAAGAACAAGCTGCTGTAGTTTTAATGTCACTTTCTTATGGATCTGTTTATGCTTAA 402 0.403 MEFDHSEKGSEAEDTNPNSGSEHKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGVNKGNNNDEIRKGKRSNSNNKIGESLKQRLWALGKEVMMQRSTMRKKLGEEEQAAVVLMSLSYGSVYA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2007 133 ProSitePatterns GATA-type zinc finger domain. 27 52 IPR000679 GO:0006355|GO:0043565
Lan1g2007 133 PANTHER OS01G0976800 PROTEIN 6 133 - -
Lan1g2007 133 SMART GATA_3 21 81 IPR000679 GO:0006355|GO:0043565
Lan1g2007 133 Pfam GATA zinc finger 27 61 IPR000679 GO:0006355|GO:0043565
Lan1g2007 133 MobiDBLite consensus disorder prediction 1 20 - -
Lan1g2007 133 ProSiteProfiles GATA-type zinc finger domain profile. 21 57 IPR000679 GO:0006355|GO:0043565
Lan1g2007 133 CDD ZnF_GATA 26 82 IPR000679 GO:0006355|GO:0043565
Lan1g2007 133 Gene3D - 22 88 IPR013088 GO:0006355|GO:0008270
Lan1g2007 133 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 62 - -
Lan1g2007 133 MobiDBLite consensus disorder prediction 1 45 - -
Lan1g2007 133 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2007 Lan-Chr1 35231883 35232778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g2007 21 133 C2C2-Gata Transcription Factor Family AT3G06740 66.949 2.21e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan1g2007 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2007 - - aprc:113847917 189.119