Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1999 ATGTGTGGTGGTGCTATCATCTCAGATTTCATAGATGTGAAGTTGAAGCGTGGTCGCAAATTGACCACGAATGATCTTTGGTCCGAGCTTGATGTTTTCTCTAATTCATCTTCCTCCTCTTCTTCTTCCTCTTCCATTTCGAAACCATTACCACCCAACCTTCTTCAATTCCCAAACAACCAAGAAAAGGAGAGATACAAGAGTGAGTCGAAGAAGAGTAAGAGTGAGAGTGTTAGGAAGAACATATACAGAGGAATAAGGCAAAGGCCATGGGGAAAATGGGCTGCTGAGATAAGAGACCCATACGAAGGCGTTCGAGTATGGCTTGGCACCTTCAACACCGCCGAAGAAGCCGCTCGTGCTTACGACGCTGCCGCCAAGCGCATCCGTGGTGATAAGGCCAAGCTCAACTTCCCTGACGACCCACCCAATCCCAAGAAGCCTCGACTCATCAGTACAACACCCGCTCTGCCAGCTGAGGTCCCTCAGCCTCAGGCTCAGAGTGGATCCTGTCTTGAGGTGCACGATCCACTCTCGAGCCTGAAATTGTTCCTTGGTTTGGACCATGAAGAACTTCAGACTCAGACTAAGACCCAAACTCTCGACTTTGAGTGGGACACCCTCTCTTCCTTGGAACCTTGGATGCTAGATGACATTGTTCTGTCACACCGTTTTTAG 678 0.4897 MCGGAIISDFIDVKLKRGRKLTTNDLWSELDVFSNSSSSSSSSSSISKPLPPNLLQFPNNQEKERYKSESKKSKSESVRKNIYRGIRQRPWGKWAAEIRDPYEGVRVWLGTFNTAEEAARAYDAAAKRIRGDKAKLNFPDDPPNPKKPRLISTTPALPAEVPQPQAQSGSCLEVHDPLSSLKLFLGLDHEELQTQTKTQTLDFEWDTLSSLEPWMLDDIVLSHRF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1999 225 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Lan1g1999 225 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Lan1g1999 225 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lan1g1999 225 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lan1g1999 225 MobiDBLite consensus disorder prediction 62 79 - -
Lan1g1999 225 MobiDBLite consensus disorder prediction 33 79 - -
Lan1g1999 225 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Lan1g1999 225 PANTHER DNA-BINDING DOMAIN 1 158 IPR044808 GO:0003700|GO:0009873
Lan1g1999 225 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Lan1g1999 225 PANTHER EREBP TRANSCRIPTION FACTOR 1 158 - -
Lan1g1999 225 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Lan1g1999 225 MobiDBLite consensus disorder prediction 33 61 - -
Lan1g1999 225 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1999 Lan-Chr1 35175005 35176133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1999 1 223 AP2-EREBP Transcription Factor Family AT3G16770 43.023 1.78e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g1999 AP2 8.2e-15 CL0081