Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1998 ATGAATTCCAATTACACCAAATCTAACCAATCCAAAACACCTTCTTCATCTTCAGTTTCTCTCAACAACTTCAACTTCGATTTCGATCTCGGTATCGGATCCAATCGATCTAAACCACTGAACGATCATAAAAAACCCAACCCCAACAATTCCTCTTATTCCCATTCTACCCCTTCTCCCCAACCATGGCAACCCAACAAGCCATCATGGACCCACCAACCCGCACCGGTTCATACAAACCCGATCGGGTTACCGGGTCGACCCGCTTCCATGGCTGGTGACATTTTCGGCAAAACGTGGGGATCAACACAGACTCAACCCACTATTGGAATCATCAATAATAAAAACCCTAATCTTTTTGGTGATTTGGTTAGTTCTGCTTTGGGTCAAGGTCCTAATAAAACTTCTTCTTCTTCTTCTTCTTCTTCATTCAATGTTCCTCTAAAAAATGCAACTCCACCTTCCAACAAAAACTCTTCATTTTCTATGGGGAATTTGGGAGATTCTTTGCCTAATTTTGTGGGTCTTAGTGGGAATAGTGGGAATGTTAATAAAAGTTCCAATCTTGGTGGTTCTTCTATGAGTAGTGGAATTGGGATAAATTCTAATAAAAATGATAATAATAACAAAGATCCATTTAGTTCTTTGGGTAGTGGTATTGGATCTAAGCCTTCTGGTAGTGTTAATTCATTTGTTAATAAACCCCAAAAGGTTGATTATGAGGATGATGGTTTTGGAGATTTTCAGAATGCTTCAAAATCAACCCCTATTGCTTCATTTCCATCAGTGGGTAGTGCAGGAATTGACATTGATTTTAGTGGATTCACGGCCTCGAATCAGAGCCCTCCTGTTAAGCCATATGGTGGTGGTGGTGGTGATCCAATTGACATGCTTTTCTCGGCTTCCACGACATCGGCTGGAGGTGTTTCTGGAGGGCAGCCTGCTTCCGAAATGGATGATTGGGGTTTGGAATCGGACTTTGGTGGGGGAAGCCATGATGTGGGTGGCTCTACTACTGAGCTTGAAGGGCTTCCACCACCTCCTGCTGGGATATCAGGTTCGACTGCGAAAGGAAAGGGAATGGACAGTTACAAGCATGGCCAGTTTGCTGATGCTATTAAATGGCTCTCTTGGGCTGTCGTCCTTTTAGAGAAAGCCGGGGATAGTGCGGCCACATTCGAGGCTTTGTCATCCAGAGCTTCTTGTTACAAAGAAGTTGGAGAGTATAAGAAAGCAGTTGCGGATTGTACAAAGGTTCTTGAAAATGAAAAGGCCAATGTATCTGTCCTCGTACAGCGAGCTCTCTTGTATGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGGACTGTGCTGAAGATTGATCCCAGTAATAGAATTGCGAAAAGTACTGTTCACCGGTTGGCTAAAATGGCTGAATAG 1428 0.4328 MNSNYTKSNQSKTPSSSSVSLNNFNFDFDLGIGSNRSKPLNDHKKPNPNNSSYSHSTPSPQPWQPNKPSWTHQPAPVHTNPIGLPGRPASMAGDIFGKTWGSTQTQPTIGIINNKNPNLFGDLVSSALGQGPNKTSSSSSSSSFNVPLKNATPPSNKNSSFSMGNLGDSLPNFVGLSGNSGNVNKSSNLGGSSMSSGIGINSNKNDNNNKDPFSSLGSGIGSKPSGSVNSFVNKPQKVDYEDDGFGDFQNASKSTPIASFPSVGSAGIDIDFSGFTASNQSPPVKPYGGGGGDPIDMLFSASTTSAGGVSGGQPASEMDDWGLESDFGGGSHDVGGSTTELEGLPPPPAGISGSTAKGKGMDSYKHGQFADAIKWLSWAVVLLEKAGDSAATFEALSSRASCYKEVGEYKKAVADCTKVLENEKANVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAKSTVHRLAKMAE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1998 475 MobiDBLite consensus disorder prediction 44 60 - -
Lan1g1998 475 MobiDBLite consensus disorder prediction 1 20 - -
Lan1g1998 475 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Lan1g1998 475 SMART tpr_5 353 386 IPR019734 GO:0005515
Lan1g1998 475 SMART tpr_5 427 460 IPR019734 GO:0005515
Lan1g1998 475 SMART tpr_5 393 426 IPR019734 GO:0005515
Lan1g1998 475 PANTHER OS03G0340700 PROTEIN 1 475 - -
Lan1g1998 475 MobiDBLite consensus disorder prediction 123 163 - -
Lan1g1998 475 SUPERFAMILY TPR-like 357 465 IPR011990 GO:0005515
Lan1g1998 475 MobiDBLite consensus disorder prediction 28 100 - -
Lan1g1998 475 MobiDBLite consensus disorder prediction 184 233 - -
Lan1g1998 475 Gene3D Tetratricopeptide repeat domain 353 474 IPR011990 GO:0005515
Lan1g1998 475 Pfam Tetratricopeptide repeat 395 425 IPR019734 GO:0005515
Lan1g1998 475 Pfam Tetratricopeptide repeat 428 460 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1998 Lan-Chr1 35163787 35166174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1998 368 475 Calmodulin-binding Proteins AT3G25230 32.432 1.69e-09 58.2